1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaagattttgattgaccacataactcatttgtgtgttactttgatacttcagtacatggtaccgatctcaaacatgttgtttcccag
species | Zea mays |
transcript | GRMZM5G860137_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGGCATAGCAGCTCGGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT GTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATEST: gi|71426143|gb|DR807193.1|DR807193
genomic: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaa ... tgtttcccagGTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGAT
EST: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT GTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGGTGTTGACAAGGATEST: gi|71439486|gb|DR820536.1|DR820536
genomic: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaa ... tgtttcccagGTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGAT
EST: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT GTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTEST: gi|6994169|gb|AW453383.1|AW453383
genomic: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaa ... tgtttcccagGTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTT
EST: GTGGCATAGCAGCTCGGGATAGCGGTGCATTTTCTTGGGAGATTGTTCCT GTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATEST: gi|12047245|gb|BF729384.1|BF729384
genomic: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaa ... tgtttcccagGTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGAT
EST: GTGGCATAGCAGCTCGGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT GTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGATEST: gi|89760643|gb|DY688974.1|DY688974
genomic: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaa ... tgtttcccagGTTGAAATTTCTTCTGGTAGAGGGAAACCACCAGTTGTTGTTGACAAGGAT
EST: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCT GTTTGAA-TTTCTTCTG
genomic: GTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaa ... tgtttcccagGTT-GAAATTTCTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCGTATGCTATCCTCAGCAATGAACGTGGCATAGCAGCTCAGGACAGCGGTGCATTTTCTTGGGAGATTGTTCCTgtgcgtgcaagattttgattgaccacataactcatttgtgtgttactttgatacttcagtacatggtaccgatctcaaacatgttgtttcccag
- - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT