1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTCACCTATCTAGGATATGACTTCCTTGCCATCAAGACTTTGGTTAATCGGGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTGgtatgttgtgttcatattgtttgttctttgtttgtcatgtggctagcgcacatgaagttatttctaatatctctatgatatacag
species | Zea mays |
transcript | GRMZM2G472991_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTG ATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTCEST: gi|18384009|gb|BM417209.1|BM417209
genomic: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTGgtatgttgtg ... tgatatacagATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTC
EST: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTG ATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTCEST: gi|18383990|gb|BM417190.1|BM417190
genomic: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTGgtatgttgtg ... tgatatacagATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTC
EST: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTG ATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTCEST: gi|76014835|gb|DT942005.1|DT942005
genomic: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTGgtatgttgtg ... tgatatacagATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTC
EST: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTG ATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTC
genomic: GGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTGgtatgttgtg ... tgatatacagATATATTTGAGGTTGCCACAGAGGATGGTACAGTACTCGCCATGAAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACCTATCTAGGATATGACTTCCTTGCCATCAAGACTTTGGTTAATCGGGGAGTTTTTGCTTCAGTTGGCCGTCAGATCGGTGTTGGAAAGGAGTCTGgtatgttgtgttcatattgtttgttctttgtttgtcatgtggctagcgcacatgaagttatttctaatatctctatgatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG