1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGTCGAAGGAAAAGTACATGTCCAAGGAAGAGAAGCAGACATCAATCAATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAGgtaatggttcgttttttatataggagtcttctgattgctgaacatccatcttgtataaattcaggaagaaagcgttgtccctacacctaatgaacctagt...
species | Zea mays |
transcript | GRMZM2G459291_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAG GCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTGEST: gi|78021401|gb|DV489788.1|DV489788
genomic: ATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAGgtaatggttc ... ctgagcatagGCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTG
EST: ATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAG GCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTGEST: gi|6227239|gb|AW155838.1|AW155838
genomic: ATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAGgtaatggttc ... ctgagcatagGCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTG
EST: ATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAG GCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTGEST: gi|60359077|gb|DN226050.1|DN226050
genomic: ATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAGgtaatggttc ... ctgagcatagGCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTG
EST: AAACTGAAGGACATGATGAAGACAGAG GCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTG
genomic: AAACTGAAGGACATGATGAAGACAGAGgtaatggttc ... ctgagcatagGCCGGGAAAAGGAGAGCTGAGAAAAGGCATAGGTTCATGGAGGAATTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTCGAAGGAAAAGTACATGTCCAAGGAAGAGAAGCAGACATCAATCAATCATTTTCATGAGAAGCTTTTTAAACTGAAGGACATGATGAAGACAGAGgtaatggttcgttttttatataggagtcttctgattgctgaacatccatcttgtataaattcaggaagaaagcgttgtccctacacctaatgaacctagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaag