Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTCGACAGGAGTCACAGTTTCATAGGGCAACTTCTAGTAATTTCATCCGAAACCCAGATTCCAGCAACAGAGgtacttaatatattcagaagactttattgtaattcatgttttctgaggaaaccttgcatgcattttgtaaaaaaaaagtatttggttgttactaatctaattttctactctttgatatttgttggcag

Basic information

species Zea mays
transcript GRMZM2G438895_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60339512|gb|DN206485.1|DN206485
EST:     TAGGGCAACTTCTAGTAATTTCATCCGAAACCCAGATTCCAGCAACAGAG                         CAATGGTTGAGGTTGAGTCCGCTTTAAGACATAAAGCAAGATTAGAGAGGC
genomic: TAGGGCAACTTCTAGTAATTTCATCCGAAACCCAGATTCCAGCAACAGAGgtacttaata ... ttgttggcagCAATGGTTGAGGTTGAGTCCGCTTTAAGACATAAAGCAAGATTAGAGAGGC
EST: gi|60346103|gb|DN213076.1|DN213076
EST:     AGGGCAACTTCTAGTAATTTCATCCGAAACCCAGATTCCAGCAACAGAG                         CAATGGTTGAGGTTGAGTCCGCTTTAAGACATAAAGCAAGATTAGAGAGGC
genomic: AGGGCAACTTCTAGTAATTTCATCCGAAACCCAGATTCCAGCAACAGAGgtacttaata ... ttgttggcagCAATGGTTGAGGTTGAGTCCGCTTTAAGACATAAAGCAAGATTAGAGAGGC
EST: gi|67012495|gb|CO441244.1|CO441244
EST:     ACTTCTAGTAATTTCATCCGAAACCCANATTCCGGCAACAGAG                         CAATGATTGAGGTTGAGTCCGCTTTAAGACATAAAGCAAGATTAGAGAGGC
genomic: ACTTCTAGTAATTTCATCCGAAACCCAGATTCCAGCAACAGAGgtacttaata ... ttgttggcagCAATGGTTGAGGTTGAGTCCGCTTTAAGACATAAAGCAAGATTAGAGAGGC