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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGAGTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccag

Basic information

species Zea mays
transcript GRMZM2G376619_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376619_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTGGAGTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccag
|||||||| ||||| ||||||||||| || ||||| || ||| | ||||||||||||||||||||||||||||||||  |       || |   ||  || ||  |   ||||        | |||| |  ||  || || | | ||||  |  ||   |||                                                                                         
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgtaa-gtg-----gtcgagtgataattaagcata--tact--------tagatcaatagtcaattggttaataaactgctctgctgcag-----------------------------------------------------------------------------------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
GTTGTGGAGTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTT--CACTGATGAGGgtaat-atatccat--atccaaccatgtttc----agtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccg-tgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccag
        |      || ||| |||| ||    |  |   |||    | || |||  | | |  ||   |  |  |  ||   | |  |  | |||||  |  | |     ||  ||| | ||||   |||  || || |       |  | ||   |||   |    |  |            |  |   |||  ||    | | | ||  |  |   |  ||        |  | ||  ||                  
-------TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTA----TCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatt------tgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaaaagctggcccccattcttgttgcctgcag-----------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGAGTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatata----tccatatccaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccag
||||| || ||||| || ||||| || || || ||||| ||||||||||||||||| |||||||||||||| ||||  ||     ||  |||  || |   ||   |  |  |  || |  ||  | | | ||  |||| ||   |    |                                                                                                        
GTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtag-------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G376619_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGAGTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatccaaccatgtttcagtttgcttactctg-tgtaatggatctactgtttatcgggtgaaaaacatcgatgtcccagagggtgcaagggctgctctgaatctgtcaggaaccgtgcttggatattatcctatcaatgttctaccgtcaaaaactgcattgcaccag
||||| || |||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| ||  | ||   |  |  |  ||| |  | | | |  |  | ||| |  |    || | |  |      ||                                                                                                     
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattatttcattttct--cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag----------------------------------------------------------------------------------------------------