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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTGCTGGAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgttgctggattcacaactaatctgaactactgatatgcaaaaccagctgtttattattaaaatctagctgacatactgccatatactactgta...

Basic information

species Zea mays
transcript GRMZM2G179810_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179810_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g40010.4 (Oryza sativa), 5'ss of exon 5
AACGTGCTGGAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccg----cgttgctggattcacaactaatctgaactact--gatatgcaaaaccagctgtttattattaaaat-ctagctgacatactgccatatactactgta
|||| |||||||| || || || |||||||||||| ||||||||||||| ||||| ||||||        ||  |   ||||||   ||  |  |  | ||  || |  ||   ||  |   |   || | |  |   |  | |  || |    || |        
AACGCGCTGGAGCTGACGTTGTTGAGTGCGCGTGTCTCATTGGGCTCCCAAAATTTAAGgtattcttattgtcacattattcacggttatccatatattctttgacaaacatttccgacatctctctacttagttgtcactttatgtagtattttacat-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211540437|gb|FL210078.1|FL210078
EST:     GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
EST: gi|6527132|gb|AW216342.1|AW216342
EST:     GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
EST: gi|30088016|gb|CB886221.1|CB886221
EST:     GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
EST: gi|101394573|gb|EB819221.1|EB819221
EST:     GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
EST: gi|60351100|gb|DN218073.1|DN218073
EST:     GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
EST: gi|211540438|gb|FL210079.1|FL210079
EST:     GTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
EST: gi|211225134|gb|FL465855.1|FL465855
EST:     GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
EST: gi|211542408|gb|FL173494.1|FL173494
EST:     GAGCCGATGTGGTCGAGTGCGCGTGTGTCATCGGGCTCCCGAAATTCAAG                         GATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT
genomic: GAGCCGATGTGGTCGAGTGCGCGTGTGTCATTGGGCTCCCGAAATTCAAGgtaccgcgtt ... ttccctgcagGATTTGTACAAGTTGAATGGAAAACCTGTATACGTGCTGGTTGAGTCTCGT