ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GAAAATCCTGCTCGAGCCAATGGTCACATCTTCAATGTTGGGAATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccattagatttatatgacatgacgccgtcaagtaatggtcgggtgttaccagtttctgttgtttttgtgccgcgcag

Basic information

species	Zea mays
transcript	GRMZM2G167872_T02
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G167872_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 7

GAAAATCCTGCTCGAGCCAATGGTCACATCTTCAATGTTGGGAATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccattagatttatatgacatgacgccgtcaagtaat--ggtcgggtgttaccagtttctgttgtttttgtgccgcgcag
|||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||| || || |||||| | |||||  |||||||||||||||||    ||||||       || ||      | |  ||   |   ||      |  ||    |||    |  |||| | |  |||
GAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGgtac-atcattag-----cgtggcaatgtttctttgagcgtttctgttactcatgccctaagtcttacatggttgtcctgtacag

upper sequence: GRMZM2G167872_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 7

GAAAATCCTGCTCGAGCCAATGGTCACATCTTCAATGTTGGGAATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgt--attgccattagatttatatgacatgacgccgtcaagtaatggtcgggtgttaccagtttctgttgtttttgtgccgcgcag
|| ||||||||  | || |||||||||||||||||||| || || ||  ||||||||||||| |||||| || | ||  |||||||||| |||||  ||   |  | | ||||| |||    |    |     || |  | ||    ||    ||  |||| || ||        |||
GATAATCCTGCCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCCAACAATGAGGTTACTGTTAGGCAGCTTGCAGAAATGATGACTGAGgtgaataagcgattggtttatttgatgcaatattgatctttatttttgggactctatatattgatgtttttcttccattcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|78023452|gb|DV491839.1|DV491839

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|60350531|gb|DN217504.1|DN217504

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|61119120|gb|DN560081.1|DN560081

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|33097643|gb|CF057603.1|CF057603

EST:     GGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: GGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|149013843|gb|EE043323.2|EE043323

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|15057268|gb|BI361240.1|BI361240

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCC

EST: gi|211201981|gb|FL057813.1|FL057813

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|5922187|gb|AW055457.1|AW055457

EST:     GCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: GCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|211031095|gb|FL449268.1|FL449268

EST:     GGTTAGGGAAGTTGGCCCCAAAGGATGACAGAG                         GTTCTATGCAAACGTCTCCAGGAGAGGCGCCCGCTGGATGAGCCTATGATC
genomic: GGTTAGGG-AGTTGG-CCCAAATGATGACAGAGgtattgccat ... tgccgcgcagG-TCTATGCAAACGTCT-CAGGAGAGGCG-CCGCTGGATGAGCCTATGATC

EST: gi|6095362|gb|AW120029.1|AW120029

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|149048836|gb|EE048336.2|EE048336

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|78088131|gb|DV516524.1|DV516524

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCGGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|5468619|gb|AI834410.1|AI834410

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|20507862|gb|BQ279797.1|BQ279797

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|32859492|gb|CD999173.1|CD999173

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|29130958|gb|CB381662.1|CB381662

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|89755200|gb|DY685717.1|DY685717

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|29545164|gb|CB605342.1|CB605342

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|148943582|gb|EC888645.2|EC888645

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|19770313|gb|BQ035034.1|BQ035034

EST:     ACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|60342920|gb|DN209893.1|DN209893

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|113763842|gb|DW884960.1|DW884960

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTA
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTA

EST: gi|88754947|gb|DY539088.1|DY539088

EST:     ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: ATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

EST: gi|32943135|gb|CF047954.1|CF047954

EST:     TCC-GAACAATGAAGTTACCGTTAGGGAGTTGGCCCAAATGATGACAGAG                         GTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC
genomic: TCCTG-ACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 337

GAAAATCCTGCTCGAGCCAATGGTCACATCTTCAATGTTGGGAATCCTGACAATGAGGTTACGGTTAGGGAGTTGGCCCAAATGATGACAGAGgtattgccat ... tgccgcgcagGTCTATGCAAACGTCTCAGGAGAGGCGCCGCTGGATGAGCCTATGATCGACGTGAGTTCGAGTCAGTTCTACGGTGAAGGATACGATGACAGTGATAAGA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 145

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 152