1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTTTTGGGGACTCCAGACTCCATTCTTTATTCATATGGGATTTCTACAATATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGCgtaagttcaccgaattaaaaaattatgaaattcacaagtattattggaaccttgacttgtttgatgtatcgaggtctgcatgcttggccttttagacata...
species | Zea mays |
transcript | GRMZM2G165613_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCNATAGTCGCEST: gi|211397241|gb|FL471415.1|FL471415
genomic: ATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATC-ATAGTCGC
EST: TGTGATACCTCCCTTCTGTAAGAAAGGAGATATCATAGTCGC TGATGAGGGTGTTCACTGGGCAGTG-AAAATGGTCTCCATCTATCAAGAAGEST: gi|13388351|gb|BG462287.1|BG462287
genomic: TGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGCgtaagttcac ... gtgattgcagTGATGAGGGTGTTCACTGGGCAGTGCAAAATGGTCTCCATCTATCAAGAAG
EST: ATATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGC TGATGAGGGTGTTCACTGGG
genomic: ATATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGCgtaagttcac ... gtgattgcagTGATGAGGGTGTTCACTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTTTGGGGACTCCAGACTCCATTCTTTATTCATATGGGATTTCTACAATATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGCgtaagttcaccgaattaaaaaattatgaaattcacaagtattattggaaccttgacttgtttgatgtatcgaggtctgcatgcttggccttttagacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaatt