Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctattcttcatgatttaacaaaaataatattggtgacttcactcaagcaactttacttattcaatttgcag

Basic information

species Zea mays
transcript GRMZM2G159397_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241219|gb|DT649133.1|DT649133
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTC
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTC
EST: gi|78180034|gb|DV550407.1|DV550407
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTT
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTT
EST: gi|32845828|gb|CD985509.1|CD985509
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32846013|gb|CD985694.1|CD985694
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGGGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148949380|gb|EC894836.2|EC894836
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|76284475|gb|DV024043.1|DV024043
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|6918768|gb|AW400298.1|AW400298
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTT-GTGAAGCAA-TAAGTGTCTTCGAAG
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAG
EST: gi|67042829|gb|CO469084.1|CO469084
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|101398167|gb|EB820957.1|EB820957
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTTGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|67010834|gb|CO439583.1|CO439583
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|71772521|gb|DR970452.1|DR970452
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32847389|gb|CD987070.1|CD987070
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|89247844|gb|DY619630.1|DY619630
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAA-                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|76291286|gb|DV030854.1|DV030854
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148951163|gb|EC896843.2|EC896843
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32848283|gb|CD987964.1|CD987964
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32845763|gb|CD985444.1|CD985444
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32845979|gb|CD985660.1|CD985660
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|149078371|gb|EE167144.2|EE167144
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|111145770|gb|EE258148.1|EE258148
EST:     AACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: AACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32867389|gb|CF007071.1|CF007071
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|78093002|gb|DV521376.1|DV521376
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148951164|gb|EC896844.2|EC896844
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|18166498|gb|BM336337.1|BM336337
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|78093003|gb|DV521377.1|DV521377
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|76284474|gb|DV024042.1|DV024042
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|71757422|gb|DR955359.1|DR955359
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|50338645|gb|CO533771.1|CO533771
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|16925533|gb|BM078601.1|BM078601
EST:     CATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGC-AATAAGTGTCTTCGAAGAAGA
genomic: CATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|67010653|gb|CO439402.1|CO439402
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|211322817|gb|FL126990.1|FL126990
EST:     AGAACCTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAGGTGTCTTCGAAGAAGA
genomic: AGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32845975|gb|CD985656.1|CD985656
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|71772520|gb|DR970451.1|DR970451
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32867990|gb|CF007672.1|CF007672
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGNNNNNN                         N
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcag-
EST: gi|32867990|gb|CF007672.1|CF007672
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGNNNNNN                         N
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcag-
EST: gi|109179245|gb|EC379888.1|EC379888
EST:     ACNCAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTTGTGAAGCAAATAAG
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTT-GTGAAGCAAATAAG
EST: gi|149098430|gb|EE184409.2|EE184409
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTTTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|149077648|gb|EE166352.2|EE166352
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|16918939|gb|BM073961.1|BM073961
EST:     AGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: AGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32847364|gb|CD987045.1|CD987045
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|211509211|gb|FL030116.1|FL030116
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|149105410|gb|EE290922.2|EE290922
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGGAGCAAA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAA
EST: gi|78111103|gb|DV529500.1|DV529500
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|67029631|gb|CO458380.1|CO458380
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148995802|gb|EE035033.2|EE035033
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32845953|gb|CD985634.1|CD985634
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|6918769|gb|AW400299.1|AW400299
EST:     CACATGGTTGATCAGCTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: CACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGT-GAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|67017342|gb|CO446091.1|CO446091
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|149105409|gb|EE290921.2|EE290921
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|50338643|gb|CO533769.1|CO533769
EST:     ACAAGGACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACAAGGACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|76019607|gb|DT946777.1|DT946777
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|50338758|gb|CO533884.1|CO533884
EST:     AACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: AACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32834521|gb|CD974199.1|CD974199
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|62525802|gb|DN828450.1|DN828450
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32866045|gb|CF005727.1|CF005727
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|213188331|gb|FM192652.1|FM192652
EST:     CTACAAGGACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: CTACAAGGACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|149081319|gb|EE170433.2|EE170433
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|76291287|gb|DV030855.1|DV030855
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|149098431|gb|EE184410.2|EE184410
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32827710|gb|CD967388.1|CD967388
EST:     CTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: CTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|91874357|gb|EB404314.1|EB404314
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148931272|gb|EC874097.2|EC874097
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGACAAAA                         GAACAAATGTTTTGTGAAGCACATAACTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32832923|gb|CD972601.1|CD972601
EST:     ACCCAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|58030049|gb|CX725476.1|CX725476
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32847609|gb|CD987290.1|CD987290
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32867989|gb|CF007671.1|CF007671
EST:     TGGTTGATCAACTGACAGAACTTCAGNNNNNNN                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: TGGTTGATCAACTGACAGAACTTCAG-AAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148995435|gb|EE034634.2|EE034634
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148950935|gb|EC896570.2|EC896570
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|148950936|gb|EC896571.2|EC896571
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|67019373|gb|CO448122.1|CO448122
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|67010697|gb|CO439446.1|CO439446
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCANATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|88757755|gb|DY541896.1|DY541896
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|50338492|gb|CO533618.1|CO533618
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|71757423|gb|DR955360.1|DR955360
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|149078369|gb|EE167143.2|EE167143
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32857599|gb|CD997280.1|CD997280
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|50338890|gb|CO534016.1|CO534016
EST:     AAGGACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: AAGGACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|108824286|gb|EC278294.1|EC278294
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAAATAAGTGTCTTCCAAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAA-TAAGTGTCTTCGAA-GAAGA
EST: gi|67026224|gb|CO454973.1|CO454973
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|108953949|gb|EC364944.1|EC364944
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAA
EST: gi|148949381|gb|EC894837.2|EC894837
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|211053063|gb|FL461731.1|FL461731
EST:     ACCCAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|32847327|gb|CD987008.1|CD987008
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
EST: gi|67013405|gb|CO442154.1|CO442154
EST:     ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG                         GAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA
genomic: ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 42 (downstream exon)
Score: 289

ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA


Block sizes: 42 (upstream exon), 42 (downstream exon)
Score: 2

ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA


Block sizes: 30 (upstream exon), 20 (downstream exon)
Score: 2

ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 461

ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAAgtatgctatt ... caatttgcagGAACAAATGTTTTGTGAAGCAAATAAGTGTCTTCGAAGAAGA