1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCTTATTTTGATATCAGAGCTGCACGGAATGCAATGCGCGCATTGCAGAACAAACCTCTGAGGAGGAGAAAGCTGGACATTCATTTTTCCATCCCAAAGgttgtttgttgtttcggttttatttatcagacacaccaacaaaattacttcttggaatgatcgttgtgtttgattttgcag
species | Zea mays |
transcript | GRMZM2G154229_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACAAACCTCTGAGGAGGAGAAAGCTGGACATTCATTTTTCCATCCCAAAG GAGAATCCATCTGACAAAGATTTGAACCAGGGAACTCTTGTTATTTTTAACEST: gi|28873630|gb|CB329594.1|CB329594
genomic: ACAAACCTCTGAGGAGGAGAAAGCTGGACATTCATTTTTCCATCCCAAAGgttgtttgtt ... gattttgcagGAGAATCCATCTGACAAAGATTTGAACCAGGGAACTCTTGTTATTTTTAAC
EST: AAAGCTGGACATTCATTTTTCCATCCCAAAG GAGAATCCATCTGACAAAGATTTGAACCAGGGAACTCTTGTTATTTTTAACEST: gi|71313421|gb|DR793261.1|DR793261
genomic: AAAGCTGGACATTCATTTTTCCATCCCAAAGgttgtttgtt ... gattttgcagGAGAATCCATCTGACAAAGATTTGAACCAGGGAACTCTTGTTATTTTTAAC
EST: ACAAACCTCTGAGGAGGAGAAAGCTGGACATTCATTTTTCCATCCCAAAG GAGAATCCATCTGACAAAGATTTGAACCAGGGAACTCTTGTTATTTTTAAC
genomic: ACAAACCTCTGAGGAGGAGAAAGCTGGACATTCATTTTTCCATCCCAAAGgttgtttgtt ... gattttgcagGAGAATCCATCTGACAAAGATTTGAACCAGGGAACTCTTGTTATTTTTAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTATTTTGATATCAGAGCTGCACGGAATGCAATGCGCGCATTGCAGAACAAACCTCTGAGGAGGAGAAAGCTGGACATTCATTTTTCCATCCCAAAGgttgtttgttgtttcggttttatttatcagacacaccaacaaaattacttcttggaatgatcgttgtgtttgattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA