1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctgatgatttgtctgcttgcatgctggtttccatgtgacgaaatgaatcctgtagattctctcttctttagcgtagccattttacctcatccct...
species | Zea mays |
transcript | GRMZM2G153991_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211117648|gb|FL049547.1|FL049547
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: CCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCCAC-AAAGATTCCGG GTGGAGCAACTCTGATCTTCCACACGGAEST: gi|91054743|gb|EB165161.1|EB165161
genomic: CCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCC-ACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|24773940|gb|CA409194.1|CA409194
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|149005134|gb|EE039667.2|EE039667
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|22819346|gb|BU499436.1|BU499436
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|148931677|gb|EC874859.2|EC874859
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|30031800|gb|CB833651.1|CB833651
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211117646|gb|FL049545.1|FL049545
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAEST: gi|211205079|gb|FL419130.1|FL419130
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCRCCANAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211117643|gb|FL049542.1|FL049542
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAEST: gi|211116864|gb|FL049538.1|FL049538
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTEST: gi|211117642|gb|FL049541.1|FL049541
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCT
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATEST: gi|211082659|gb|FL412223.1|FL412223
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGAT
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|61117990|gb|DN558951.1|DN558951
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|18179873|gb|BM381083.1|BM381083
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|116823847|gb|EC867424.1|EC867424
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|61117991|gb|DN558952.1|DN558952
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211116862|gb|FL049536.1|FL049536
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATEST: gi|22542120|gb|BU092558.1|BU092558
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGAT
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211079084|gb|FL380731.1|FL380731
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|6828177|gb|AW331820.1|AW331820
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|61117992|gb|DN558953.1|DN558953
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|61117989|gb|DN558950.1|DN558950
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|18179296|gb|BM380506.1|BM380506
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|32865924|gb|CF005606.1|CF005606
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211453697|gb|FL370753.1|FL370753
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|149090104|gb|EE179400.2|EE179400
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211389797|gb|FL380127.1|FL380127
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|21987364|gb|BQ778892.1|BQ778892
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|211122276|gb|FL373651.1|FL373651
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTC-ACACGGAGCTTATCGCCCGTCA-CGGGAAGEST: gi|149071444|gb|EE159839.2|EE159839
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCC-GTCAACGGGAAG
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATTTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|149005133|gb|EE039666.2|EE039666
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATTTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|60399310|gb|DN232124.1|DN232124
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|113686987|gb|DW842316.1|DW842316
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTAGATCTTCGACACGGAGCTTATCGEST: gi|149071445|gb|EE159840.2|EE159840
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCT-GATCTTCGACACGGAGCTTATCG
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGAEST: gi|24773190|gb|CA408444.1|CA408444
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctgatgatttgtctgcttgcatgctggtttccatgtgacgaaatgaatcctgtagattctctcttctttagcgtagccattttacctcatccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcatcc