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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTGGGGTAGAACCTGCTGAAACTAGTGTGATTTCTGGTGATAGCCCTGgtaatgcgttaactgcttgccccctttgtaataagcaattcaactttcaacatgctaggaaacaaaagcttattgaatatcttttccttgcctctgacatatactgtttgttcatgccaataaacaacag

Basic information

species Zea mays
transcript GRMZM2G133359_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133359_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g59920.1 (Oryza sativa), 5'ss of exon 6
GTTATTGGGGTAGAACCTGCTGAAACTAGTGTGATTTCTGGTGATAGCCCTGgtaatgcgttaactgcttgccccctttgtaataagcaattcaactttcaacatgctaggaaacaaaagcttattgaatatcttttccttgcctctgacatatactgtttgttcatgccaataaacaacag
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GTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGgtaa---gttcaata---accccattc--------caatttagcaatcaacatatttgggaattga-gcatattaagagtatattccttggcattgacatc--cttttggttgatgtcaattaa-aacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88748683|gb|DY532824.1|DY532824
EST:     TATTGGGGTAGAACCTGCTGAAACTAGTGTGATTTCTGGTGATAGCCCTG                         GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG
genomic: TATTGGGGTAGAACCTGCTGAAACTAGTGTGATTTCTGGTGATAGCCCTGgtaatgcgtt ... taaacaacagGTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG