1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAAgtatagcattgattttgttggactattttctttcaattgttagcaatagaaacaacatttagctaactatgctatcttgcag
species | Zea mays |
transcript | GRMZM2G126656_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAA AGTAGCAATTGTTTCGCCTACAGATCCTEST: gi|30704520|gb|CD058548.1|CD058548
genomic: GAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAAgtatagcatt ... tatcttgcagAGTAGCAATTGTTTCGCCTACAGATCCT
EST: GAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAA AGTAGCAATTGTTTCGCCTACAGATCCTGTGTGTGTAGCAGCACAAAAAATEST: gi|71766059|gb|DR963996.1|DR963996
genomic: GAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAAgtatagcatt ... tatcttgcagAGTAGCAATTGTTTCGCCTACAGATCCTGTGTGTGTAGCAGCACAAAAAAT
EST: GAGAGGATGTTCAAACCTTCTCTGTCTACCATCGTCACAGAGAATACAAA AGTAGCAATTGTTTCGCCTACAGATCCTGTGTGTGTAGCAGCACAAAAAAEST: gi|148949419|gb|EC894878.2|EC894878
genomic: GAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAAgtatagcatt ... tatcttgcagAGTAGCAATTGTTTCGCCTACAGATCCTGTGTGTGTAGCAGCACAAAAAA
EST: GAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAA AGTAGCAATTGTTTCGCCTACAGATCCTGTGTGTGT
genomic: GAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAAgtatagcatt ... tatcttgcagAGTAGCAATTGTTTCGCCTACAGATCCTGTGTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTCTGTCAACCATCGTCACAGAGAATACAAAgtatagcattgattttgttggactattttctttcaattgttagcaatagaaacaacatttagctaactatgctatcttgcag
- - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - AGGATG