Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttcattgccagtttctatcttattgcatgctttgtaaagataaattacacctgaaaacatttaggctctcaagtgcagtaagttcatctgctat...

Basic information

species Zea mays
transcript GRMZM2G121820_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g59440.1 (Oryza sativa), 5'ss of exon 5
TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttcattgcca--gtttctatcttattgcatgctttgtaaagataaattacacctgaaaacatttaggctctcaagtgcagtaagttcatctgctat
|||||||||||| |||||| |||| || || ||||| || || |||||||||||||| ||||| || ||||||||||||| | ||||   ||     | ||||    |  |  | |    |||| |     | |    || |    | ||||    | |    |   |    | 
TGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAgtaagtttgactgcctttgtgatactattatgatttcttcagcagtattaaagtcattatcattttatattaaatttcaaaactaatgg--tagcccaaaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733713|gb|BE512465.1|BE512465
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTG
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTG
EST: gi|17929723|gb|BM266689.1|BM266689
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|71763196|gb|DR961133.1|DR961133
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|91874179|gb|EB404136.1|EB404136
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGGCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|26557278|gb|CA829513.1|CA829513
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|71766703|gb|DR964640.1|DR964640
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60358579|gb|DN225552.1|DN225552
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|213184412|gb|FM188458.1|FM188458
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|15188221|gb|BI417198.1|BI417198
EST:     TGTGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|30087058|gb|CB885266.1|CB885266
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|5597188|gb|AI891181.1|AI891181
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCA-                         CTTTGAGAAGAACC
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACC
EST: gi|30032043|gb|CB833894.1|CB833894
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTAAGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|149095176|gb|EE180793.2|EE180793
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTCCAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|5895619|gb|AW036865.1|AW036865
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60394754|gb|DN227624.1|DN227624
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|148972291|gb|EE023193.2|EE023193
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAAAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|31612157|gb|CD568779.1|CD568779
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAAGGTCCAGAGCTACAAGGCCTGGCCA
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAA-GGTCCAGAGCTACAAGGCCTGGCCA
EST: gi|211244696|gb|FL479034.1|FL479034
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|76014413|gb|DT941583.1|DT941583
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|166697008|gb|EG137350.1|EG137350
EST:     TTCCCTACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TTCCC-ACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|16137383|gb|BI894248.1|BI894248
EST:     TGTGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|28873785|gb|CB329726.1|CB329726
EST:     GACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: GACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|4966551|gb|AI691407.1|AI691407
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|30086962|gb|CB885170.1|CB885170
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|22545940|gb|BU098299.1|BU098299
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|91873861|gb|EB403818.1|EB403818
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCTTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCC
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCC
EST: gi|30306876|gb|CD001549.1|CD001549
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|18170321|gb|BM340161.1|BM340161
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60338279|gb|DN205252.1|DN205252
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|109637591|gb|EC591136.1|EC591136
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCCGCGCTTGGGAAGGTCCAGAGCTAC
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCC-GCGCTTGG-AAGGTCCAGAGCTAC
EST: gi|15177611|gb|BI398550.1|BI398550
EST:     TGTGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|71436702|gb|DR817752.1|DR817752
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|78089347|gb|DV517721.1|DV517721
EST:     TGCGGGACGATTCCCACTTCTGGCCCATTTGAGCATATTCCTTTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|211233135|gb|FL455795.1|FL455795
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAACATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|21809924|gb|BQ668242.1|BQ668242
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|211082646|gb|FL412210.1|FL412210
EST:     GCGGGACGATTCCCACGTCTGGGAC-ATTTGAACATATTCCTCTGAGCAA                         CTTTGAGAAGACCCCGCGC
genomic: GCGGGACGATTCCCACGTCTGG-ACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGC
EST: gi|148941830|gb|EC886803.2|EC886803
EST:     TGCGGGACGATTTCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCC
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCC
EST: gi|76012011|gb|DT939181.1|DT939181
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|4885819|gb|AI676939.1|AI676939
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|9733712|gb|BE512464.1|BE512464
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAG                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|32940802|gb|CF045621.1|CF045621
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|22545450|gb|BU097809.1|BU097809
EST:     TGCGGGACAATTCCCACGTCTGGACCCTTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60349397|gb|DN216370.1|DN216370
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|148933347|gb|EC877009.2|EC877009
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|15177610|gb|BI398549.1|BI398549
EST:     TGTGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|211478992|gb|FL272010.1|FL272010
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAACATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|89131927|gb|DY577100.1|DY577100
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|148933348|gb|EC877010.2|EC877010
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|149000066|gb|EE037172.2|EE037172
EST:     TGCGGGACGATTCCCACTTCTGGACCATTTGAGCATATTCTTTTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60396509|gb|DN229378.1|DN229378
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|149095177|gb|EE180794.2|EE180794
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|50325813|gb|CO520939.1|CO520939
EST:     GACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: GACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|15323606|gb|BI478890.1|BI478890
EST:     TGTGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60337402|gb|DN204375.1|DN204375
EST:     GAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: GAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|30306664|gb|CD001337.1|CD001337
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|22549219|gb|BU101420.1|BU101420
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|15323607|gb|BI478891.1|BI478891
EST:     TGTGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|30088202|gb|CB886407.1|CB886407
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|78027497|gb|DV495884.1|DV495884
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|149000067|gb|EE037173.2|EE037173
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|211152911|gb|FL469818.1|FL469818
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAACATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|37373616|gb|CF623115.1|CF623115
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGTAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|149000533|gb|EE037716.2|EE037716
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGAAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|78077979|gb|DV506396.1|DV506396
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCTA                         CTTTGAGAAGAACCCGCGCTTGGAAGG
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGG
EST: gi|211392189|gb|FL369325.1|FL369325
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|37396731|gb|CF635659.1|CF635659
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|71766702|gb|DR964639.1|DR964639
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|78077978|gb|DV506395.1|DV506395
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTTTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|22521623|gb|BU080434.1|BU080434
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60348625|gb|DN215598.1|DN215598
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|22546266|gb|BU098577.1|BU098577
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|78089348|gb|DV517722.1|DV517722
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|31997810|gb|CD661783.1|CD661783
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|31997809|gb|CD661782.1|CD661782
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|71448904|gb|DR829954.1|DR829954
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|30031710|gb|CB833561.1|CB833561
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCC
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCC
EST: gi|71319607|gb|DR796562.1|DR796562
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|110202223|gb|EC884120.1|EC884120
EST:     TGCGGGACGATTCCCGCGTCTGGACCATTTGAGCATATTCCTTTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|71758054|gb|DR955991.1|DR955991
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTTTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|60398400|gb|DN231216.1|DN231216
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|14243408|gb|BG841108.2|BG841108
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|148994954|gb|EE034307.2|EE034307
EST:     TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|40334004|gb|CK368074.1|CK368074
EST:     TGCGGGAC-ATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACC-GCGCTT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTT
EST: gi|37388668|gb|CF631545.1|CF631545
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|91874178|gb|EB404135.1|EB404135
EST:     TGCGGGACGATTCCCACGTCTGGGCCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT
EST: gi|37381290|gb|CF627520.1|CF627520
EST:     TGCGGGACAATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA                         CTTTGAGAAGAACCCGCGCTTGTAAGGTCCAGAGCTACAAGGCCTGGCCAT
genomic: TGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 776

TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATACGACACCAACTGCTAGAGGGCACCACGAAGAAAAGAACTGCTAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 575

TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATACGACACCAACTGCTAGAGGGCACCACGAAGAAAAGAACTGCTAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 681

TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATACGACACCAACTGCTAGAGGGCACCACGAAGAAAAGAACTGCTAGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 816

TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttca ... ccccctgcagCTTTGAGAAGAACCCGCGCTTGGAAGGTCCAGAGCTACAAGGCCTGGCCATATACGACACCAACTGCTAGAGGGCACCACGAAGAAAAGAACTGCTAGAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAAgtaagtttcattgccagtttctatcttattgcatgctttgtaaagataaattacacctgaaaacatttaggctctcaagtgcagtaagttcatctgctat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataaa