1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTTCCTACAAACCCAAAAGGTGCTGAGAGACTTCCACCAGGCATTGTAGTGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggttgttagccattttcttcaaaactgccttgaatttcttttttaacatattttatatacactctatgttcttaaacatatgccattcatcag
species | Zea mays |
transcript | GRMZM2G119725_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGEST: gi|149108358|gb|EE292696.2|EE292696
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTEST: gi|76930436|gb|DV172388.1|DV172388
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTT
EST: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG GACCTTACTAGCGAGCCEST: gi|148937093|gb|EC881269.2|EC881269
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCC
EST: TGTCTGACACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGEST: gi|211445045|gb|FL132441.1|FL132441
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGEST: gi|148961302|gb|EE012027.2|EE012027
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGEST: gi|149104738|gb|EE290190.2|EE290190
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGG
EST: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAG GACCTTACTAGCGAGCCGAGGTATCTTGGTACTTTTACTG
genomic: TGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggtt ... cattcatcagGACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCCTACAAACCCAAAAGGTGCTGAGAGACTTCCACCAGGCATTGTAGTGTCTGAAACAGATCTTTATCCCCGAAGACTATGGGGTGATCCTAGTGAGgttcgtggttgttagccattttcttcaaaactgccttgaatttcttttttaacatattttatatacactctatgttcttaaacatatgccattcatcag
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