Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAACGATATGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgacaagagaaacaattaaattagtaggccgattgtgcccttctgagatgatccatgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G101571_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101571_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g57510.4 (Oryza sativa), 5'ss of exon 5
GGGAACGATATGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgacaagagaa-acaattaaatt---agtaggccgattgtgc--ccttctgagat---gatccatgtgtgcag-----
|| || ||||||||| | |||||||||||||||||||| || |||||||| ||||||||||||| |    | | |  |||||     |   |  |  ||    ||     || ||||||     ||  |||| | |       
GGCAATGATATGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactcacacagtacaatcttccttccatcataccatccgtatattctgctgagaccgcaattgatgtctacgatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345631|gb|DN212604.1|DN212604
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|37622088|gb|CF675141.1|CF675141
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|87154400|gb|DY399189.1|DY399189
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|92088107|gb|EB484338.1|EB484338
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211216835|gb|FL144756.1|FL144756
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|78021287|gb|DV489674.1|DV489674
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304813|gb|FL144776.1|FL144776
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAG-ATGGGAACC-TCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|33097946|gb|CF057906.1|CF057906
EST:     TGGCTACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACTAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|87155055|gb|DY399844.1|DY399844
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|32868635|gb|CF008317.1|CF008317
EST:     TGGCTACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACTAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|74240317|gb|DT648231.1|DT648231
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211216837|gb|FL144758.1|FL144758
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGAC-GTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211216833|gb|FL144754.1|FL144754
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAG-ATGGGAACC-TCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|28910030|gb|CB331222.1|CB331222
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211306828|gb|FL144778.1|FL144778
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAG-ATGGGAACC-TCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|93281723|gb|EB673987.1|EB673987
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGCCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304811|gb|FL144774.1|FL144774
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304800|gb|FL144763.1|FL144763
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|5871387|gb|AW017858.1|AW017858
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304807|gb|FL144770.1|FL144770
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGANCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|6031335|gb|AW076192.1|AW076192
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304806|gb|FL144769.1|FL144769
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAG-ATGGGAACC-TCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|21394168|gb|BQ538598.1|BQ538598
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|26455131|gb|CA826714.1|CA826714
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304808|gb|FL144771.1|FL144771
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|60348036|gb|DN215009.1|DN215009
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|33093600|gb|CF053594.1|CF053594
EST:     TGGCTACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACTAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|22546781|gb|BU099092.1|BU099092
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|60343725|gb|DN210698.1|DN210698
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304809|gb|FL144772.1|FL144772
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCATCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211216840|gb|FL144761.1|FL144761
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211306827|gb|FL144777.1|FL144777
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAG-ATGGGAACC-TCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304812|gb|FL144775.1|FL144775
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304803|gb|FL144766.1|FL144766
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCA
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCA
EST: gi|71328891|gb|DR801128.1|DR801128
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211216839|gb|FL144760.1|FL144760
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAG-ATGGGAACC-TCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304801|gb|FL144764.1|FL144764
EST:     TGGATACTTCAAGGGGTTTTCTGNCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCANGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|28910937|gb|CB331689.1|CB331689
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCCAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|32856010|gb|CD995691.1|CD995691
EST:     GACCGTGGACAAATTCAAGATG                         GTATTTGAGACTAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: GACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|30160483|gb|CB924212.1|CB924212
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|14255659|gb|BG878567.1|BG878567
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
EST: gi|211304805|gb|FL144768.1|FL144768
EST:     TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATG                         GTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC
genomic: TGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgaca ... atgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGAACGATATGGATACTTCAAGGGGTTTTCTGTCTGGGACCGTGGACAAATTCAAGATGgtaagcgacaagagaaacaattaaattagtaggccgattgtgcccttctgagatgatccatgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG