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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCTGATGCATTGCTTACTATCACTGAACTGTAGTGTCTGTACGGCAGGTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctgattagttcttttggtttggagggatccaagcacgctttgttcattctgttctggtttgctatccgctaaagttcgatgacactgagtctc...

Basic information

species Zea mays
transcript GRMZM2G086971_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086971_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g06900.t01 (Vitis vinifera), 5'ss of exon 6
CCTTCTGATGCATTGCTTACTATCACTGAACTGTAGTGTCTGTACGGCAGGTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctgattagttct-tttggtttggagggatccaagcacgctttgttcattctgttctggtttgctatccgctaaagttcgatgacactgagtctc-
                                                  ||| ||  ||||| ||||| | |  |||||||||||||||||||||||||||||||  |||  || ||| | |    |||| ||||     |  | ||| |   |  | |  |  |||  |   |  |    | | ||     |||   || 
--------------------------------------------------GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatga--agctctatcttacatggatggatggcctcttgttttttctttcttttcttcatttttttggctatggtttcctatagatatgatcttct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5740116|gb|AI947806.1|AI947806
EST:     TGGTATCTCAATGTATGAAAGTG                         GAGATATTGTGAAGTNCCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
genomic: TGGTATCTCAATGTATGAAAGTGgtaagttctg ... ggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
EST: gi|78125582|gb|DV543966.1|DV543966
EST:     GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTG                         GAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
genomic: GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctg ... ggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
EST: gi|76012728|gb|DT939898.1|DT939898
EST:     GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTG                         GAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT
genomic: GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctg ... ggatgtgcagGAGATATTGTGAAGTACCTGTTCAGGAACTATGGACAAGGAAGGAGTCCTT