1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTGGGCCCTGATGGGAAGGTAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACTgtaagaataacctagaaccttttgtttatttcaaacaaagagctgacttggatgcaagctgtttagttacatgaatgcaataatttcag
species | Zea mays |
transcript | GRMZM2G082174_T05 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATCCATTGAGAACATGCAATATGCTGTGACAGGGGATGTTCTGCACACT GTGTTTTCTGCTTTTGGAGCTGTTCAAAAEST: gi|74240234|gb|DT648148.1|DT648148
genomic: CATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACTgtaagaataa ... ataatttcagGTGTTTTCTGCTTTTGGAGCTGTTCAAAA
EST: CATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACT GTGTTTTCTGCTTTTGGAGCTGTTCAAAAAATTGCAATGTTTGAGAAGAATEST: gi|148944648|gb|EC889782.2|EC889782
genomic: CATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACTgtaagaataa ... ataatttcagGTGTTTTCTGCTTTTGGAGCTGTTCAAAAAATTGCAATGTTTGAGAAGAAT
EST: CATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACT GTGTTTTCTGCTTTTGGAGCEST: gi|148982096|gb|EE028144.2|EE028144
genomic: CATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACTgtaagaataa ... ataatttcagGTGTTTTCTGCTTTTGGAGC
EST: CATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACT GTGTTTTCTGCTTTTGGAGCTGTTCAAAAA
genomic: CATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACTgtaagaataa ... ataatttcagGTGTTTTCTGCTTTTGGAGCTGTTCAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGGCCCTGATGGGAAGGTAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACAGTGGATGTTCTGCACACTgtaagaataacctagaaccttttgtttatttcaaacaaagagctgacttggatgcaagctgtttagttacatgaatgcaataatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA