1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAAAGGGAGAAGGTCCTGAATCATTTTAGATCTGGGCGCTCTCCTATTTTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGACATCAAAGATATCAGgttagactaacttcccattctctgttatgcatatgcatgtgtgtatgccttttgctttctaatgtcatggtaggatggaataacaacaacaaagcctttt...
species | Zea mays |
transcript | GRMZM2G077125_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGACATCAAAGATATCAG GGTAGTGATCAACTATGACTTCCCCACTGGTGTTGAAGACTATGTTCACAGEST: gi|32844852|gb|CD984533.1|CD984533
genomic: TTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGACATCAAAGATATCAGgttagactaa ... ctttacacagGGTAGTGATCAACTATGACTTCCCCACTGGTGTTGAAGACTATGTTCACAG
EST: TTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGGCCTCAAAGATATCAG GGTAGTGGTCAACTATGACTTCCCCCCTGGTGTTGAAGACTATGTTCACAGEST: gi|32844997|gb|CD984678.1|CD984678
genomic: TTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGACATCAAAGATATCAGgttagactaa ... ctttacacagGGTAGTGATCAACTATGACTTCCCCACTGGTGTTGAAGACTATGTTCACAG
EST: TTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGACATCAAAGATATCAG GGTAGTGATCAACTATGACTTCCCCACCGGTGTTGAAGACTATGTTCACAG
genomic: TTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGACATCAAAGATATCAGgttagactaa ... ctttacacagGGTAGTGATCAACTATGACTTCCCCACTGGTGTTGAAGACTATGTTCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAAGGGAGAAGGTCCTGAATCATTTTAGATCTGGGCGCTCTCCTATTTTAGTGGCAACTGATGTTGCTGCGCGAGGTTTGGACATCAAAGATATCAGgttagactaacttcccattctctgttatgcatatgcatgtgtgtatgccttttgctttctaatgtcatggtaggatggaataacaacaacaaagcctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacaa