1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGTTCAATGGCATGCATTAGCTCTTGGCTTGTTTGCTTCAATAATAGCACCATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtttgtttggaattatttgttgaaaatatgtatcaccttcaaaatctcactatgtttatacattcag
species | Zea mays |
transcript | GRMZM2G062416_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGACEST: gi|211157823|gb|FL476882.1|FL476882
genomic: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
EST: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGACEST: gi|71770625|gb|DR968562.1|DR968562
genomic: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
EST: GGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGACEST: gi|211031482|gb|FL468605.1|FL468605
genomic: GGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
EST: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGACEST: gi|32908945|gb|CF013758.1|CF013758
genomic: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
EST: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCAGGTCATGGTGGATTTACAGATAGGATGGACEST: gi|71770099|gb|DR968036.1|DR968036
genomic: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
EST: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGACEST: gi|24773898|gb|CA409152.1|CA409152
genomic: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
EST: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGACEST: gi|78074248|gb|DV502682.1|DV502682
genomic: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
EST: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAG GATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
genomic: CATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtt ... atacattcagGATTTTGGGGACAGCATACCTGGTCATGGTGGATTTACAGATAGGATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTCAATGGCATGCATTAGCTCTTGGCTTGTTTGCTTCAATAATAGCACCATTTGGTGGCTTTTTTGCAAGTGGATTCAAGAGGGCATTCAAATTTAAGgtgcttagtttgtttggaattatttgttgaaaatatgtatcaccttcaaaatctcactatgtttatacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG