1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACAACTCGTGCCTTTCAGATCTGAGGAAGTTTATAGAGGCTCACTTCGAAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGGgtatgccattcggctctatccatgttatgctttgttctatgctacctgtttctcatcacaatgtcactcgtatattaccttatactaacctgagaaaatg...
species | Zea mays |
transcript | GRMZM2G062084_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGG GATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATAEST: gi|74242431|gb|DT650345.1|DT650345
genomic: AAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGGgtatgccatt ... attggtgcagGATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATA
EST: AAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGG GATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATAEST: gi|76912232|gb|DV164627.1|DV164627
genomic: AAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGGgtatgccatt ... attggtgcagGATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATA
EST: AAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGG GATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATA
genomic: AAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGGgtatgccatt ... attggtgcagGATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACAACTCGTGCCTTTCAGATCTGAGGAAGTTTATAGAGGCTCACTTCGAAGAAGCAGGCAGCAAACAGAAGCATCAGTTCACCTTCCTTCTCCTCGGGgtatgccattcggctctatccatgttatgctttgttctatgctacctgtttctcatcacaatgtcactcgtatattaccttatactaacctgagaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaat