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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAgtatttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag

Basic information

species Zea mays
transcript GRMZM2G055462_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAgt-atttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag
      || | |||||||||||  | ||| | || ||||||  ||||||||||| || ||||| || |||||||||||||||||||||||||| ||||| || | || |  |||  | | ||     |   ||||    |   |||| |||| |   ||  ||  || |    ||   |||
-----GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTT--GCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttggatatattttggtt---ttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttag

upper sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G06700.1 (Glycine max), 5'ss of exon 5
CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAgta---tttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag---------------------------------------------------
                                       | |||| ||||| || |||||||||||||| || || |||| ||||||||||||||| || | |   ||  ||| ||   |  |||   ||  || |||   |         ||    ||||  |   ||    |||  | |                                                     
---------------------------------------TCTTGCTTTCTTTACAACATATGCACTTTTGgtcctgttctaggctgagatttattaccaggcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctatgattttcttcttccatggcagtgtgttttgctgattggttttgatgggctaattaccacctgggtgttaaatgcttttgcag

upper sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G28990.1 (Glycine max), 5'ss of exon 4
CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAgta---tttctttttgtctctgttggacctctattgtt---ttgtcaatgttgttgtgcctctt--aatttttgt-tcctgttctctag--------------------------------------------
     ||  | |||||  |  | || ||  ||||  |  | |||| ||||| || |||||||||||||| || || ||||||||||||||||||||||| | |   ||  ||| ||   |  |||   ||  || |||   ||| |     || | | | ||||  |  |  ||| |  || |   | |                                            
-----ATTGTTCAACACATCTTGCTTGACGTGCC--GAGTCTTGCTTTCTTTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTATCAGgcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctgtgattttcttcttccaggtagtgtgttttgctgattggttttgatgggctgattactgcctcggtgttaaatgctttttcag

upper sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G01360.1 (Glycine max), 5'ss of exon 4
CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAgta---tttctttttgtctctgttggacctctattgttttgtcaatgttgttgtgcctcttaatttttgttcctgttctctag---------------------------------------------------
     ||  | |||||  |  | || ||  ||||  |  | |||| ||||| || |||||||||||||| || || |||||||||||||||||||| || | |   ||  ||| ||   |  |||   ||  || |||   |         ||    ||||| |   ||    |||  | |                                                     
-----ATTGTTCAACACATCTTGCTTGACGTGCC--GAGTCTTGCTTTCTTTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTACCAGgcaagtttgatttgtggtgcatttgcttctacatggttggtttgcctcctgtgattttcttattccatggcagtgtgttttgctgattggttttgatgggctgattactgcctcggtgttaaatgcttttgcag

upper sequence: GRMZM2G055462_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G19410.1 (Glycine max), 5'ss of exon 4
CTCAGATAATACAACATGTGCTTCTGGATATGCCCGGGCTTTTGCATTCTTCACGACATATGCACTTTTAGTGCTCTTCTGGGCTGAGATTTATTATCAAg-tatttctttttgtctctgttggacctctat-tgttttgtcaatgttgttgtgcctcttaatttttgttcctgt-tctctag----------------------------------------------------
     ||  | |||||  |  | || || ||| |  |  | |||| ||||| || |||||||||||||| || || |||| ||||||||||||||| || | || ||   |||||      |   | ||||  || || ||     |   | ||  | ||   ||   |  | || | | | |                                                    
-----ATTGTTCAACACATCTTGCTTGACATGTC--GAGTCTTGCTTTCTTTACAACATATGCACTTTTGgtcctgttctaggctgagatttattaccaggctagtttgatttgtggtgcatttgcttctacatggttggtttgcctc-ctatgatttttttcttccatggcagtgtgttttgctgattggttttgatgggctaattaccacctcggtgttaaatgcttttgcag