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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCCAGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgtttaaatatcaagcaagtttatctcaataaatatgaaagatctaattattctgaattttaaccctatggtataacccaatgcttctattttcag...

Basic information

species Zea mays
transcript GRMZM2G044011_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351008|gb|BM895540.1|BM895540
EST:     AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAG                         GAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
genomic: AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgttta ... tcttttgtagGAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
EST: gi|19272449|gb|BM888705.1|BM888705
EST:     AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAG                         GAAATTTGGGATTGGTGAGCACTTGAGACCATTCAGCAAGCATGTG
genomic: AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgttta ... tcttttgtagGAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
EST: gi|19351610|gb|BM896142.1|BM896142
EST:     AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAG                         GAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
genomic: AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgttta ... tcttttgtagGAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
EST: gi|19351009|gb|BM895541.1|BM895541
EST:     AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAG                         GAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
genomic: AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgttta ... tcttttgtagGAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
EST: gi|32825337|gb|CD965059.1|CD965059
EST:     AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAG                         GAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
genomic: AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgttta ... tcttttgtagGAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
EST: gi|89251335|gb|DY623121.1|DY623121
EST:     AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAG                         GAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
genomic: AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgttta ... tcttttgtagGAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
EST: gi|22491504|gb|BU051427.1|BU051427
EST:     AGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAG                         GAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG
genomic: -GTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgttta ... tcttttgtagGAAATTTGGGATTGGTTAGCACTTGAGACCATTCAGCAAGCATGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGGCCAGTTCCACACGTTAGAGCTTGAGCTGAAGAGACCTTTTGTTCTACGAAAGgtattgtttaaatatcaagcaagtttatctcaataaatatgaaagatctaattattctgaattttaaccctatggtataacccaatgcttctattttcag

- - - - - - - - - - AGAGCT
- - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - -  AAGAGA