1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAGATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttggattcatctgagccttagttctattcttttctttttaccgtgtccttttacttacagaatagtaccctgtctttttttctcgaaagagcgc...
species | Zea mays |
transcript | GRMZM2G040945_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAGEST: gi|76020213|gb|DT947383.1|DT947383
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAG
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCCAAACTGGAGEST: gi|76915905|gb|DV166160.1|DV166160
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAG
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAGEST: gi|76925058|gb|DV170275.1|DV170275
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAG
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAGEST: gi|78103885|gb|DV522308.1|DV522308
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAG
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAGEST: gi|71417284|gb|DR803998.1|DR803998
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAG
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAGEST: gi|94475337|gb|EB704295.1|EB704295
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAG
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAGEST: gi|78111525|gb|DV529922.1|DV529922
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATTGTTCAACACTTTATAGATGCAAAACTGGAG
EST: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAG GCATGTCTGATTGCCGATATTNGTCCA-CACTTTATAGA
genomic: ATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttgg ... ttcttcacagGCATGTCTGATTGCCGATATT-GTTCAACACTTTATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTTGAGTGAGATAAAAGAGCTCTATGGCACACGGCATATTGGCAGAGATCAAGCTCGTCATCTTGTTGGGCTGATGGATGTCTTCTGTTTTAGTGAGgtacatttggattcatctgagccttagttctattcttttctttttaccgtgtccttttacttacagaatagtaccctgtctttttttctcgaaagagcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA