1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTTAGATGTTGGCCAGGTGGTCTATGCCTCTCAAGATCGATTGGTGATCAGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgttggaaagtcactttacaccatttttggataaaactgaattgtaaactcctgctgtagtgatatcacattcaaataccagaagctgtgctgt...
species | Zea mays |
transcript | GRMZM2G015610_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCGGTTCCTTATGTGAAGCAAATTAAG CTGTCTAACGCTGGAGGCCGTCTTATTATTTCAAGTGACGGTGTTTGGGATEST: gi|91869347|gb|EB400346.1|EB400346
genomic: CCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
EST: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAG CTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGATEST: gi|32913202|gb|CF018014.1|CF018014
genomic: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
EST: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAG CTGTCTAACGCTGGAGGCCGTCTTATTATTTCAAGTGACGGTGTTTGGGATEST: gi|148930783|gb|EC873124.2|EC873124
genomic: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
EST: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAG CTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
genomic: AGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgtt ... atgcttgtagCTGTCTAACGCTGGAGGTCGTCTTATTATTTCAAGTGACGGTGTTTGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTAGATGTTGGCCAGGTGGTCTATGCCTCTCAAGATCGATTGGTGATCAGGACGTAGGTGAATTTATCATTCCGGTTCCTTATGTGAAGCAAATTAAGgtacactgttggaaagtcactttacaccatttttggataaaactgaattgtaaactcctgctgtagtgatatcacattcaaataccagaagctgtgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggataaaa