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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGGCAACATCAACTGGGCTAAGCGTACCAAATGTAATATATGTAACACCTCCAAGCCTGGTACCAATGAAGGTGgtgtgaggcaagtacaatggcactatttgcatgtggttggtttgaaacatattatttaagccgataatataaattgtactctagcaggtaaacatattgt...

Basic information

species Zea mays
transcript AC185415.3_FGT005
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC185415.3_FGT005 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g19560.2 (Oryza sativa), 5'ss of exon 5
GTGCGGCAACATCAACTGGGCTAAGCGTACCAAATGTAATATATGTAACACCTCCAAGCCTGGTACCAATGAAGGTGgtgtgaggcaagtacaatg-----gcactatttgcatgtggttggtttg--aaacatattatttaagccgataatataaattgtactctagcaggtaaacatattgt--
||| |||||||| || ||||| ||||| |  ||||||||||| ||||||||| ||||||| |||  ||||||||||||||| ||| |||   ||       |||| |  ||||||||     |     |  || ||  || ||    || || |   |  | || | ||| | ||  ||| ||   
GTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGgtaagagtaagacgtatgcacaacctgcatgtgtcatatccatcagtcaaatagttgaaatatattatttgcctc-tgctttggcatg-aattatagtgagc

upper sequence: AC185415.3_FGT005 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g12800.1 (Oryza sativa), 5'ss of exon 5
GTGCGGCAACATCAACTGGGCTAAGCGTACCAAATGTAATATATGTAACACCTCCAAGCCTGGTACCAATGAAGGTGgtgtgaggcaagtacaatggcactatttgcatgtggttggtttgaaacat-attatttaagccgataatataaattgt--actctagcaggtaaacatattgt-------
||| |||||||| || ||||| ||||| |  ||||||||||| ||||||||| | ||||| |||  ||||||||||||||||||| ||| |||   |||| |  |||||||||   |||     | |    | ||||   |   | ||  ||| |   |  | ||      |   | | |       
GTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACTAAGCCAGGTCACAATGAAGGTGGTGTGAGgtaag-acat--gcacaacctgcatgtggcatgttcattgctttgccagttaaatagtcgaaatgtattatttgcctttgctttggcatgaactatggtgagc

upper sequence: AC185415.3_FGT005 (Zea mays), 5'ss of exon 5
lower sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 4
GTGCGGCAACATCAACTGGGCTAAGCGTACCAAATGTAATATATGTAACACCTCCAAGCCTGGTACCAATGAAGGTGgtgtgaggcaagtacaatggcactatttgcatgtggttg--gtttgaaacatattatttaagccgataatataaattgtactct-agcaggtaaacatattgt----
||| |||||||| |||||||| ||||| || || || |||||||| ||||||   ||||||||    |||||||||||||||||| | | |  ||||   | |||  ||  | | |  ||| |  |  | |||| |  ||  ||   | ||     | | | ||| |  ||  || ||      
GTGTGGCAACATTAACTGGGCAAAGCGGACAAAGTGCAATATATGCAACACCAATAAGCCTGGCCATAATGAAGGTGGTGTGAGgtagggatgatggttatgttttaattggatggatgttggttattttttatctgtgcatatgtcagaaccacaatttttagctgacaataatcttcctttc