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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACCGCAACGCCAACGCCACGGAGATCCTTTCCCGGACGACATTCCCGCGGGGGCACGCGCTCAACTTGCCGTTGCCGCAGAACATTCTAGACCACGAgtaagccactcaccactgctgtgctagctaagctacctgctccctcaatctatccactaccacttcatgcatgcggccatgccatgccagccaggaaaca...

Basic information

species Zea mays
transcript GRMZM5G876768_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152390_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g13520.1 (Oryza sativa), 5'ss of exon 5
------CGCACCGCAACGCCAACGCCACGGAGATCCTTTCCCGGACGACATTCCCGCGGGGGCACGCGCTCAACTTGCCGTTGCCGCAGAACATTCTAGACCACGAgtaagc---cactcaccactgctgtgctagctaagctacctgctccctcaatctatccactaccacttcatgcatgcggccatgccatgccagccaggaaaca
      |||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| | ||       ||||| ||||||||||||||||||||   | | |||  |       || | | |   | |  |  | ||||  |      |  |  |||||   ||   |||    |   ||           
ACGAGGCGCACCGCAACGCCGACGCCACGGAGATCCTCTCCCGGACGACCTTCCCCCGGGGGCACTCGCTCAACCTCCCC------CAGAAGATTCTAGACCACGAgtaagcaaacgcacacacccctcccacttgatcattcatcgacctcttcaaaatcctatttttcctttcatttttg-acccaaattaaaacacattttttt--