1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCCCTGATTGCTCATTTCCAGAACTCTAGTTTGATGAATGAGGACAAACGCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAGgtatgcttattttgtattttgtcctgggtactttccctcctgtctttttctccggttacattatgtactgttgtcttgtgagttgtgacaagtcttctct...
species | Zea mays |
transcript | GRMZM5G814700_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAG GAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGGEST: gi|22472602|gb|BU037082.1|BU037082
genomic: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAGgtatgcttat ... tctttctcagGAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGG
EST: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAG GAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGGEST: gi|26558461|gb|CA830696.1|CA830696
genomic: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAGgtatgcttat ... tctttctcagGAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGG
EST: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAG GAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGGEST: gi|33093066|gb|CF053060.1|CF053060
genomic: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAGgtatgcttat ... tctttctcagGAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGG
EST: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAG GAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGG
genomic: GCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAGgtatgcttat ... tctttctcagGAACCTTTCCCCATGGGTTCAAACATCCGAGCCAGGTCTGGGAGATCCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCCTGATTGCTCATTTCCAGAACTCTAGTTTGATGAATGAGGACAAACGCTGCCGCCCCATACTTTTCCACTCAGATGGTCCTAATGCAGGAGATCAGgtatgcttattttgtattttgtcctgggtactttccctcctgtctttttctccggttacattatgtactgttgtcttgtgagttgtgacaagtcttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA