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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCAGATTCTTGGGCTGATATTGTTACAACTAATGATATCTTCTGCCCTCCAGGGCACTACTGTCCATCCACAACCCAGAAATACAATTGCAGCAGTGGgtactgcctctttcttacacgccattatccataatttatggtgatgttttgtcctgttgctaattgttatttgtcactttgtattgtgcag

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87153810|gb|DY398599.1|DY398599
EST:     CCAGGGCACTACTGTCCATCCACAACCCAGAAATACAATTGCAGCAGTGG                         GCACTATTGCCGCAAAGGTTCCACCGATGAAAAGA
genomic: CCAGGGCACTACTGTCCATCCACAACCCAGAAATACAATTGCAGCAGTGGgtactgcctc ... tattgtgcagGCACTATTGCCGCAAAGGTTCCACCGATGAAAAGA
EST: gi|22490203|gb|BU050126.1|BU050126
EST:     CCAGGGCACTACTGTCCATCCACAACCCAGAAATACAATTGCAGCAGTGG                         GCACTATTGCCGCAAAGGTTCCNCCGATGAAAAGA
genomic: CCAGGGCACTACTGTCCATCCACAACCCAGAAATACAATTGCAGCAGTGGgtactgcctc ... tattgtgcagGCACTATTGCCGCAAAGGTTCCACCGATGAAAAGA
EST: gi|18654968|gb|BM499773.1|BM499773
EST:     CCAGGGCACTACTGTCCATCCACAACCCAGAAATACAATTGCAGCAGTGG                         GCACTATTGCCGCAAAGGTTCCACCGATGAAAAGA
genomic: CCAGGGCACTACTGTCCATCCACAACCCAGAAATACAATTGCAGCAGTGGgtactgcctc ... tattgtgcagGCACTATTGCCGCAAAGGTTCCACCGATGAAAAGA