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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatattatagactatttttcttagttgtgatatttatgcatttaaacatccatatgatcgtccttgcag

Basic information

species Zea mays
transcript GRMZM2G359234_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g62020.1 (Oryza sativa), 5'ss of exon 4
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacata--------ttatagactatt--tttcttagttgtgatatttatgca----tttaaacatccatatgatcgtccttgcag
||||| ||||| || ||||||||||||||||| ||||| ||||| || || ||||| |||||||| |||||||||||||| |||||| ||||   || ||        ||||  ||| ||  || |  | ||| | | |  ||       | | |   |  | |||||  || ||| ||
GTGCGCATTGCTCGCATTTTCAATACATATGGCCCTCGAATGTGTCTAGATGATGGCCGTGTGGTTAGCAATTTTGTTGCCCAGgttcgtttaacacgtaccgctattttattaacttttggttacacatttgcgctgtcaatatgaaattctgagtttatacatgattatcattgtag

upper sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 4
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatattatagactatttttcttagttgtgat-----atttatgcatttaaac-atccatatgatcgtccttgcag
|| |||||||| || |||||||| |||||||| || || |||||  | || ||||| ||||| || |||||||||||||||||||||||  |      |  | ||    |||| || |  |||||       |||| ||   ||| || ||  || |     |  || |||
GTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGgtttgactttcttgtcct-tatttaatttgtcattattgtggagagcaatttgtgttcttatactatttatttacatatgtttccag

upper sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 4
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatattatagactatttttcttagttgtgat-----atttatgcatttaaac-atccatatgatcgtccttgcag
|| |||||||| || ||||||||||||||||| || || |||||  | || ||||| ||||| || ||||||||||||||||||||||| ||      |  | ||   | ||| || |  |||||       | || ||   ||| || ||  || |  |  |  ||||||
GTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGgtttgattttcttgtcct-tattttttttgtcattattgtggagaggaacttgtgttcttatactatatatttatttatgtttgcag

upper sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 4
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatat---tatagactatttttcttagttgtgatattt---atgcatttaaacatccatatgatcg------tccttgcag
||  | ||||| ||||||||||| |||||||| ||  | |||||||| || ||||| ||||| || || || |||||||| |||||||   | || |||     || |||| |    | |    |      |||   |  || |   |||    |||  | |      ||  |||||
GTTAGAATTGCTCGTATTTTCAACACATATGGGCCCAGAATGTGCCTTGATGATGGGCGTGTTGTTAGTAACTTTGTTGCCCAGgtttagctccttcatcaacataaagacaaccgctttcgtataaagccttttgaaaacactctgacagaactattgtggcttatatctatgcag

upper sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0040g02710.t01 (Vitis vinifera), 5'ss of exon 5
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgct--acatattatagac-tatttttcttagttgtgatatttatgcatttaaacatccatatgatc------gtccttgcag----------------------
|| ||||| || || ||||||||||||||||| |||||||||||  | || ||||| |||||||| ||||||||||||||||||||||| |  |   || |||| |      | || |   |      ||          ||| ||||   ||| |        ||  ||  |                       
GTACGTATAGCACGGATTTTCAATACATATGGGCCTCGTATGTGTATTGATGATGGGCGTGTGGTTAGCAATTTTGTTGCACAGgtttgatctcctgacttattttccttacagttctgccaaacacaatgaaccgaatcttagacatttttataagttctaaagtttttttaactgttatagctatgttttgcag

upper sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
lower sequence: EFJ23020 (Selaginella moellendorffii), 5'ss of exon 4
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatattatagactatttttcttagttgtgatatttatgcatttaaacatccatatgatcgtccttgcag
||| | || || ||||||||||| |||||||||||| | |||||||| |||||||| || || |||||||| || || || |||||          |||    |  |    || |    ||| | ||  || ||| ||    ||                     
GTGAGGATCGCTCGTATTTTCAACACATATGGTCCTAGAATGTGCCTGGACGATGGCCGAGTTGTCAGCAACTTCGTGGCCCAGgtaca---aaagcatcccttgaaaagcttcttcccgttttcattcttttgctttctcgcag--------------------

upper sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 4
lower sequence: EFJ30517 (Selaginella moellendorffii), 5'ss of exon 5
GTGCGTATTGCCCGTATTTTCAATACATATGGTCCTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgctacatattatagactatttttcttagttgtgatatttatgcatttaaacatccatatgatcgtccttgcag
||| | || || ||||||||||| |||||||||||| | |||||||| |||||||| || || |||||||| || || || |||||      || |    ||  | |    || |    ||| | ||  || | | ||    ||                     
GTGAGGATCGCTCGTATTTTCAACACATATGGTCCTAGAATGTGCCTGGACGATGGCCGAGTTGTCAGCAACTTCGTGGCCCAGgtacaaaagc-atccgttgaaaa--gcttcttcccgttttcattcttttactttctcgcag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345409|gb|DN212382.1|DN212382
EST:     CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAG                         GCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
genomic: CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgc ... gtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
EST: gi|78123100|gb|DV541484.1|DV541484
EST:     CGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAG                         GCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
genomic: CGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgc ... gtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
EST: gi|71305243|gb|DR788759.1|DR788759
EST:     CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAG                         GCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA
genomic: CTCGTATGTGCCTCGACGATGGTCGTGTGGTCAGCAATTTTGTTGCACAGgtttgtttgc ... gtccttgcagGCACTGCGAAGGCAACCGATGACAGTCTATGGTGACGGAAAACAAACTCGA