Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGTGACCGCCGCCCCTGTACgtaagcctgccgccctgcctgatccgatacgtacgatccctagctagttagcaagctgaacaacaaatcgtccatcgagtcatcgagcatgccattcagctcag

Basic information

species Zea mays
transcript GRMZM2G354151_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G354151_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g42970.1 (Oryza sativa), 5'ss of exon 2
-------GTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGTGACCGCCGCCCCTGTACgtaagcctgccgccctg--cctgatccgatacgtacgatccctagctagttagcaagctgaacaacaaatcgtccatcgagtcatcgagca-tgccattcagctcag
       |||||||||| |||||| || ||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| ||| ||||  ||| |  ||  | | | ||    ||  |    |    || |||| | |     |    || |          |   | |||    |  |  |||   | ||| | || ||||           
GACACTCGTCTTCTACAAGGGCCGTGCCCCCAATGGCCAGAAGTCGGACTGGATCATGCACGAGTACCGCCTCGAGACCAACGAAAACGGCACCAC-ACCTgtatgcatatatttgatgtttggaatttgctccggtccaataaaaaggtaccgtaccttatggt--accaaattgttttttatcatttgatctaacaatgcc-----------

upper sequence: GRMZM2G354151_T01 (Zea mays), 5'ss of exon 4
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
-GTCTTCTACAGGGGCCGCGCGCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTAGAGACCACCGAGAACGTGA-CCGCCGCCCC--TGTACgtaagcctgccgccctgcctgatccgatac---gtacgatccctagctagttagcaagctgaacaacaaatcgtccatcgagtcatcgagcatgccattcagctcag
 || ||||||| |||||| |||||  | ||||| ||| ||||||||||||||||||||| ||| |||||   |  | |  | |    |||| |   |  |||||||   | | || |  | ||    ||   ||   || ||   ||       | ||   | || |  || |     |  | |   | |||   ||||    ||| |   
GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccctttcgatcagt--gttgcattaccagaaagc--ttg---cctcggagatgct-cccagat---