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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttcttccttccaaattttctatctatgcaccctatttttcaagatgtatagcatgatgtgcgaaacaaatttagggatcatcctttttcagtttgtcatacatctattcgggctgtgtcattgttaaaattgatttgttggagcatattaactagtatgaaaactgtgcttgcatttgatcag

Basic information

species Zea mays
transcript GRMZM2G180990_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180990_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g21180.2 (Oryza sativa), 5'ss of exon 4
--CCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttcttccttccaaattttctatctatgcaccctatttttcaagatgtatagcatgatgtgcgaaacaa-atttagggatcatcctttttcagtttgtcatacatctattcgggctgtgtcattgttaaaattgatttgttggagcatattaactagtatgaaaactgtgcttgcatttgatcag
  |||||||||||| |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||  | ||  |   ||| ||  | ||| |  ||    |  |     | |   |||||||     |  |  | | ||   || | |||  || | | |                                                                                       
AGCCAAAATCATCTGAATCTTGTGGTGGTGAATAATGTCCCACTGTTTTTCAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGTgtaattttcttctctcctttttcctggc-atgaaatctgcacta-agttctttttttatgatgttaatcattatgtgtgggctccaccatttcgcattatct---------------------------------------------------------------------------------------

upper sequence: GRMZM2G180990_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g21180.1 (Oryza sativa), 5'ss of exon 4
CCAAAATCATCTTAATCTTGTAGTGGTGAATAATGTTCCTCTATTTTTCAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttcttccttccaaattttctatctatgcaccctatttttcaagatgtatagcatgatgtgcgaaacaa-atttagggatcatcctttttcagtttgtcatacatctattcgggctgtgtcattgttaaaattgatttgttggagcatattaactagtatgaaaactgtgcttgcatttgatcag
|||||||||||| |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||  | ||  |   ||| ||  | ||| |  ||    |  |     | |   |||||||     |  |  | | ||   || | |||  || | | |                                                                                       
CCAAAATCATCTGAATCTTGTGGTGGTGAATAATGTCCCACTGTTTTTCAATATCCGTGATGGTCCTTACATGCCAACCTTGCGCCTTCTTCATCAGTgtaattttcttctctcctttttcctggc-atgaaatctgcacta-agttctttttttatgatgttaatcattatgtgtgggctccaccatttcgcattatct---------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32830385|gb|CD970063.1|CD970063
EST:     CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT                         ATCCTGATATCATGAAGAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
EST: gi|60337104|gb|DN204077.1|DN204077
EST:     CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT                         ATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
EST: gi|32830364|gb|CD970042.1|CD970042
EST:     CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT                         ATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG
EST: gi|31611966|gb|CD568588.1|CD568588
EST:     CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGT                         ATCCTGATATCATGAAAAAGCTCCAAGTGGATAGAGGTGCTATCAAATTTG
genomic: CAATATACGTGATGGTCCTTACATGCCAACCCTGCGTCTTCTTCATCAGTgtaatttctt ... atttgatcagATCCTGATATCATGAAAAAGTTCCAAGTGGATAGAGGTGCTATCAAATTTG