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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatacaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatggggtgaaaaacatcgatgtcctag

Basic information

species Zea mays
transcript GRMZM2G175541_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G175541_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatacaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatggggtgaaaaacatcgatgtcctag
|||||||||||||| ||||||||||| || ||||| || ||| | ||||||||||||||||||||||||||||||||    || |   | ||  | |      | | ||||            |||| |  ||  || || | | ||||  |  ||    ||
GTTGTGGACTGTCGTATGTGTGGGGATCCGAATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGgtaagtggtcgagtgataattaagc----atatactta------------gatcaatagtcaattggttaataaactgctctgctgcag

upper sequence: GRMZM2G175541_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT4G10610.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatata----tccatatacaaccatgtttcagtttgcttactctgtgtaatggatctactgtttatggggtgaaaaacatcgatgtcctag
||||| |||||||| || ||||| || || || ||||| ||||||||||||||||| |||||||||||||| ||||  ||     ||  |||  || |   ||   |  |  |  || |  ||  | | | ||  |||| |    |    |               
GTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGgtatcattagtttctctatgtaatctgtttattggataatgcctgtaagtgcttggtttatggtttgtcattttgggacttgtag--------

upper sequence: GRMZM2G175541_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGTGGACTGTCGCATGTGTGGGGACCCAAATTCAGTCCTTAGGTTTGCTTTCATAGAGTTCACTGATGAGGgtaatatatccatatacaaccatgtttcagtttgcttactctg-tgtaatggatctactgtttatggggtgaaaaacatcgatgtcctag
||||| ||||||||||| || || |||||||| || |||||| ||||||| |||||||||||||||||||| |||| ||| | ||| | |  |  |  |  ||| |  | | | |  |  | ||| |  |    || |||  |      ||            
GTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGgtattat-ttcattttct-cggttctggagtatcatcagtgtactacagtggttaaatgtcttgtggttttgttttcag-----------