1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCGTCGAGAGCGAGCCGTACGAGTGCGGCCGGCGGCCGGAGGTGTACGCGCGGATGAAGAACTCCACGCCCAAGCTGCTCCTCGTGCCGGAGTTCAGAGgtgagaactgtttggacattggagtctgagtgctctgctatgctactgctagctcgtcgtctgctcgtcatctgctatacgcttcttattcaccgtggacggccgatccgtgttccccgtgtgtgtggatgcag
species | Zea mays |
transcript | GRMZM2G175398_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGGATGAAGAACTCCACGCCCAAGCTGCTCCTCGTGCCGGAGTTCAGAG ACGAGGATGACGAGAAGGACGATCTGATATCGGCGGTCCAGTTCCTGCTCAEST: gi|148956241|gb|EC902036.2|EC902036
genomic: GCGGATGAAGAACTCCACGCCCAAGCTGCTCCTCGTGCCGGAGTTCAGAGgtgagaactg ... gtggatgcagACGAGGATGACGAGAAGGACGATCTGATATCGGCGGTCCAGTTCCTGCTCA
EST: GCGGATGAAGAACTCCACGCCCAAGCTGCTCCTCGTGCCGGAGTTCAGAG ACGAGGATGACGAGAAGGACGATCTGATATCGGCGGTCCAGTTCCTGCTCA
genomic: GCGGATGAAGAACTCCACGCCCAAGCTGCTCCTCGTGCCGGAGTTCAGAGgtgagaactg ... gtggatgcagACGAGGATGACGAGAAGGACGATCTGATATCGGCGGTCCAGTTCCTGCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTCGAGAGCGAGCCGTACGAGTGCGGCCGGCGGCCGGAGGTGTACGCGCGGATGAAGAACTCCACGCCCAAGCTGCTCCTCGTGCCGGAGTTCAGAGgtgagaactgtttggacattggagtctgagtgctctgctatgctactgctagctcgtcgtctgctcgtcatctgctatacgcttcttattcaccgtggacggccgatccgtgttccccgtgtgtgtggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC