1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatatagttttcttgctttattttcagatgattgcttaattcatgctgattattcaaactagcaagcactttttttaccaaaaagggtctggtagtgacactgttgttaattacccag
species | Zea mays |
transcript | GRMZM2G163912_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|31350916|gb|CD435273.1|CD435273
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|211431802|gb|FL298783.1|FL298783
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|32833725|gb|CD973403.1|CD973403
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|211431805|gb|FL298786.1|FL298786
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|89757168|gb|DY686883.1|DY686883
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|211431800|gb|FL298781.1|FL298781
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAATGACEST: gi|211431801|gb|FL298782.1|FL298782
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|211431803|gb|FL298784.1|FL298784
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|32910548|gb|CF015360.1|CF015360
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|87156202|gb|DY400991.1|DY400991
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|148993804|gb|EE033889.2|EE033889
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|22521109|gb|BU079920.1|BU079920
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|149099628|gb|EE185673.2|EE185673
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCEST: gi|87156913|gb|DY401702.1|DY401702
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|32836136|gb|CD975814.1|CD975814
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCNCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|32867073|gb|CF006755.1|CF006755
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|22473217|gb|BU037697.1|BU037697
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|22520704|gb|BU079515.1|BU079515
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
genomic: CTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatat ... aattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtgtatatagttttcttgctttattttcagatgattgcttaattcatgctgattattcaaactagcaagcactttttttaccaaaaagggtctggtagtgacactgttgttaattacccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG