1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTATGCTACAAAAGGATTCTCTTAGGACTACTCTTGATAAAGTTTGTGCGAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtacccttttccctgaccagcttcattgtagcttatatttcactcttttgtaatatgagtacttccaagtcccaattctactctgagccagtcatgatct...
species | Zea mays |
transcript | GRMZM2G163713_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|78075306|gb|DV503740.1|DV503740
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|101389847|gb|EB816854.1|EB816854
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAAAGAGAGTCCCGCTGCGTTGAAGACCTATTTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|149085197|gb|EE174704.2|EE174704
genomic: GAAAGAGAGTCC-GCTGCGTTGAAGACCTATT-GAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|149069618|gb|EE158000.2|EE158000
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|148940057|gb|EC884801.2|EC884801
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|78118872|gb|DV537256.1|DV537256
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAAAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|71442758|gb|DR823808.1|DR823808
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAGEST: gi|91048771|gb|EB159189.1|EB159189
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACTCAAGGTCACTACAG
EST: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCG TCAAACCAAAGCCCCGATTTCTTCGTGTTAACACACCTCAAGGTCACTACA
genomic: GAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtaccctttt ... ttttcttcagTCAAACCAAAGCCCCGATTTCTTCGTGTTAACACAC-TCAAGGTCACTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATGCTACAAAAGGATTCTCTTAGGACTACTCTTGATAAAGTTTGTGCGAGAAAGAGAGTCCGCTGCGTTGAAGACCTATTGAGCAATAAATCAGCCGgtacccttttccctgaccagcttcattgtagcttatatttcactcttttgtaatatgagtacttccaagtcccaattctactctgagccagtcatgatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA