Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaagtgctaacaccataaacgaattatattgtatttcctgttttatatgaagaagtacatggaatatttaagttctcccttttgtaaaactgt...

Basic information

species Zea mays
transcript GRMZM2G159397_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g41950.2 (Oryza sativa), 5'ss of exon 4
GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaagtgctaa-caccataaacgaattatattgtatttcctgttttatatgaagaagtacatggaatatttaagttctcccttttgtaaaactgt
 || ||||| |||||||||||||| |||||||||||||||||||| |||  ||| ||||||||||| ||||| ||| |||||||| | ||| ||||||||||| |||    |  |     | | |    ||  |  |   ||       |  || | |     |   || || |   || | |   | |   ||  || ||
AAATTTGCTGGGTGAAGATCTTGATTCATTAGGCATAAAAGAGCTCGAGAGCCTAGAGAAGCAGCTTGATTCATCCCTGAAGCACGTCAGAACTACAAGGgtaatgattgtttttgggtgctagatcacaaacaagtaccatgcatgcatgcatgt-actccctctgtgaaaaaaaaaattccaatcctagttatgacagt

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G11120.1 (Glycine max), 5'ss of exon 4
GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaagtgctaacaccataaacgaattatattgtatttcctgttttatatgaaga-agtacatggaatat-ttaagttctcccttttgtaaaactgt--
|||| |  | || ||||||||||   | ||| |||  ||||||||||||   || || | |||||| ||||||||||||||||| |||||||| ||||||||||| ||    | |  || | |   | |||||   | |        |  | || ||| | | |||  |    || || |  | ||||| |    | |  ||  
GAACCTTATGGGAGAAGATCTTGGCCCTTTAAGCAGCAAAGAGCTGGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGgtactcaa----gtttccaacttttgccaattacgatatgaaattattgatctaggaacatattacgagcccaatcttgaactatccctatgtctatatggtca

upper sequence: GRMZM2G159397_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G28140.1 (Glycine max), 5'ss of exon 4
GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaagtgctaacaccataaacgaattatattgtatttcctgttttatatgaagaagtacatggaatatttaagttctccct-tttgtaaaactgt---
|||| |  | || ||||||||||   | ||| |||  |||||||| |||   || || | |||||| ||||||||||||||||| |||||||| || |||||||| ||   | | |      |   | ||||    |  || |    || || ||  || |  | ||  |      ||  |     | |   ||   || |   
GAACCTTATGGGAGAAGATCTTGGTCCTTTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACCAGGgtactcaagtttccaacttttcttttccaatt----tccatatgaaattgtagatctaggaacatattaagagcccaatcttgaaatatccctatgtctatatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241219|gb|DT649133.1|DT649133
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|78180034|gb|DV550407.1|DV550407
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32845828|gb|CD985509.1|CD985509
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32846013|gb|CD985694.1|CD985694
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148949380|gb|EC894836.2|EC894836
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|76284475|gb|DV024043.1|DV024043
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|6918768|gb|AW400298.1|AW400298
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|93282622|gb|EB674886.1|EB674886
EST:     CCCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGAC
genomic: CC-TGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGAC
EST: gi|67042829|gb|CO469084.1|CO469084
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|101398167|gb|EB820957.1|EB820957
EST:     ACCTGGAGAAGCAGCTCGATTTGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|67010834|gb|CO439583.1|CO439583
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|71772521|gb|DR970452.1|DR970452
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32847389|gb|CD987070.1|CD987070
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|89247844|gb|DY619630.1|DY619630
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAA-
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|76291286|gb|DV030854.1|DV030854
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATTTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148951163|gb|EC896843.2|EC896843
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|74236154|gb|DT644068.1|DT644068
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGA
EST: gi|32848283|gb|CD987964.1|CD987964
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32845763|gb|CD985444.1|CD985444
EST:     ACCTGTAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32845979|gb|CD985660.1|CD985660
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149078371|gb|EE167144.2|EE167144
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32867389|gb|CF007071.1|CF007071
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAGGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|109637403|gb|EC590948.1|EC590948
EST:     TGAAGCACATAAGAATCTGCAAGGG                         ACACANCACATGGTTTGATCAACTGACAGAACTTC
genomic: TGAAGCACATAAGA-TCTACAAGG-gtactgaaaa ... tctcctgtagACACAACACATGGTT-GATCAACTGACAGAACTTC
EST: gi|109637403|gb|EC590948.1|EC590948
EST:     TGAAGCACATAAGAATCTGCAAGGG                         ACACANCACATGGTTTGATCAACTGACAGAACTTC
genomic: TGAAGCACATAAGA-TCTACAAGG-gtactgaaaa ... tctcctgtagACACAACACATGGTT-GATCAACTGACAGAACTTC
EST: gi|78093002|gb|DV521376.1|DV521376
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148951164|gb|EC896844.2|EC896844
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|18166498|gb|BM336337.1|BM336337
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|78093003|gb|DV521377.1|DV521377
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|76284474|gb|DV024042.1|DV024042
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|71757422|gb|DR955359.1|DR955359
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|50338645|gb|CO533771.1|CO533771
EST:     CTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: CTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|67010653|gb|CO439402.1|CO439402
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32845975|gb|CD985656.1|CD985656
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|71772520|gb|DR970451.1|DR970451
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32867990|gb|CF007672.1|CF007672
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGNNNNNN
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|109179245|gb|EC379888.1|EC379888
EST:     CCTGGGAGAAGCAGCTCGATTCGTCCTTGAGGCACATAAGATCTACAAGG                         ACNCAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: CCTGG-AGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149098430|gb|EE184409.2|EE184409
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATTTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149077648|gb|EE166352.2|EE166352
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32847364|gb|CD987045.1|CD987045
EST:     ACCTGGAGAAGCGGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|211509211|gb|FL030116.1|FL030116
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149105410|gb|EE290922.2|EE290922
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|78111103|gb|DV529500.1|DV529500
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|67029631|gb|CO458380.1|CO458380
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148995802|gb|EE035033.2|EE035033
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32845953|gb|CD985634.1|CD985634
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|67017342|gb|CO446091.1|CO446091
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149105409|gb|EE290921.2|EE290921
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|76019607|gb|DT946777.1|DT946777
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32834521|gb|CD974199.1|CD974199
EST:     CTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: CTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|62525802|gb|DN828450.1|DN828450
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32866045|gb|CF005727.1|CF005727
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149081319|gb|EE170433.2|EE170433
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|76291287|gb|DV030855.1|DV030855
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149098431|gb|EE184410.2|EE184410
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|91874357|gb|EB404314.1|EB404314
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148931272|gb|EC874097.2|EC874097
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGACAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32832923|gb|CD972601.1|CD972601
EST:     CTTGAAGCACATAAGATCTCCAAGG                         ACCCAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: CTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|58030049|gb|CX725476.1|CX725476
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32847609|gb|CD987290.1|CD987290
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148995435|gb|EE034634.2|EE034634
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148950935|gb|EC896570.2|EC896570
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148950936|gb|EC896571.2|EC896571
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|149110047|gb|EE293860.2|EE293860
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCCACTGACAGAACTTCAGAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAA
EST: gi|67019373|gb|CO448122.1|CO448122
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|67010697|gb|CO439446.1|CO439446
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|88757755|gb|DY541896.1|DY541896
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|50338492|gb|CO533618.1|CO533618
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|71757423|gb|DR955360.1|DR955360
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|211112421|gb|FL337494.1|FL337494
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTG
EST: gi|149078369|gb|EE167143.2|EE167143
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32857599|gb|CD997280.1|CD997280
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|108824286|gb|EC278294.1|EC278294
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|67026224|gb|CO454973.1|CO454973
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|108953949|gb|EC364944.1|EC364944
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|148949381|gb|EC894837.2|EC894837
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|211053063|gb|FL461731.1|FL461731
EST:     TGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACCCAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: TGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|32847327|gb|CD987008.1|CD987008
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA
EST: gi|67013405|gb|CO442154.1|CO442154
EST:     ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGG                         ACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAG
genomic: ACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 476

GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA


Block sizes: 47 (upstream exon), 42 (downstream exon)
Score: 4

GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA


Block sizes: 31 (upstream exon), 28 (downstream exon)
Score: 3

GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 897

GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaa ... tctcctgtagACACAACACATGGTTGATCAACTGACAGAACTTCAGAAAAAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACTTGCTTGGTGAAGATCTTGAGTCATTAGGCATAAAAGAGCTGGAGCACCTGGAGAAGCAGCTCGATTCGTCCTTGAAGCACATAAGATCTACAAGGgtactgaaaagtgctaacaccataaacgaattatattgtatttcctgttttatatgaagaagtacatggaatatttaagttctcccttttgtaaaactgt

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC