1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTATGATGAATATACTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttgtgttttttattacagaaacatgtattatttttcctctattatgtcaagaaaatagaagggcagacctagtgcaatggtgagagctgtctc...
species | Zea mays |
transcript | GRMZM2G156734_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|76909618|gb|DV163452.1|DV163452
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|60357633|gb|DN224606.1|DN224606
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|78545094|gb|DV622592.1|DV622592
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|5871396|gb|AW017867.1|AW017867
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: GCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACCCTGACCATTACTAACAGTGATEST: gi|6031346|gb|AW076203.1|AW076203
genomic: GCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|32924962|gb|CF029774.1|CF029774
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|29130457|gb|CB381161.1|CB381161
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: TGCAACAAACAACAACGCTGCTGCATTTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|32924741|gb|CF029553.1|CF029553
genomic: TGCAACAAACAACAACGCTGCTGCATTTT-GCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|5770167|gb|AI973341.1|AI973341
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: ACAACGTTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|32925907|gb|CF030719.1|CF030719
genomic: ACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|28390336|gb|CB250165.1|CB250165
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGNCCTTTTGCTCCTGAGGCATACACTGACCATTTACTAACAGCGAEST: gi|78125041|gb|DV543425.1|DV543425
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATT-ACTAACAGCGA
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|32925165|gb|CF029977.1|CF029977
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|5325050|gb|AI783241.1|AI783241
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|78074789|gb|DV503223.1|DV503223
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|32926687|gb|CF031499.1|CF031499
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|60358023|gb|DN224996.1|DN224996
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|28361582|gb|CB239938.1|CB239938
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATAACACTGACCATTACTAACAGCGAEST: gi|71332392|gb|DR803152.1|DR803152
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATA-CACTGACCATTACTAACAGCGA
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|6031347|gb|AW076204.1|AW076204
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|32925763|gb|CF030575.1|CF030575
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|16378881|gb|BI992655.1|BI992655
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: AACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|76013718|gb|DT940888.1|DT940888
genomic: AACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACACACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|86469928|gb|DY236298.1|DY236298
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|101402591|gb|EB822839.1|EB822839
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|5846862|gb|AI999945.1|AI999945
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|32926380|gb|CF031192.1|CF031192
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|32924716|gb|CF029528.1|CF029528
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTACAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|60395273|gb|DN228142.1|DN228142
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|32840136|gb|CD979817.1|CD979817
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGATEST: gi|60336732|gb|DN203705.1|DN203705
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|76936722|gb|DV174850.1|DV174850
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGATEST: gi|211013250|gb|FL462098.1|FL462098
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
EST: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATT TTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGTGAT
genomic: CTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttg ... ctctgttcagTTGATGGCCCTTTTGCTCCTGAGGCATACACTGACCATTACTAACAGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTATGATGAATATACTGCAACAAACAACAACGCTGCTGCATTTTGCCGCTCTATATTTCTGATTgtgagttttgtgttttttattacagaaacatgtattatttttcctctattatgtcaagaaaatagaagggcagacctagtgcaatggtgagagctgtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaat