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ATGATCCGGACTTCATCGCGGCTAACCAGGGCTCTCGCGCCAACAGTGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggatatggatgctaacgtgccttggtgctaaggtgcacccagtgcaacctaaaacaaataaatactactatgaatttggtaaatatacatacat...
species | Zea mays |
transcript | GRMZM2G155242_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|32908546|gb|CF013359.1|CF013359
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: GGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|31353688|gb|CD438045.1|CD438045
genomic: GGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|31349014|gb|CD433371.1|CD433371
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|211029042|gb|FL245288.1|FL245288
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: CAAGGATATTAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|211037207|gb|FK948216.1|FK948216
genomic: CAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|4776520|gb|AI665523.1|AI665523
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|6536588|gb|AW224901.1|AW224901
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: AGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGCEST: gi|149103373|gb|EE288760.2|EE288760
genomic: AGGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGAGAAGAACAAAGTGGACAAGATAGTTGTGTTGTGGACTGC
EST: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAG GGAGTTTAAGGA
genomic: ATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggat ... aatgaaacagGGAGTTTAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATCCGGACTTCATCGCGGCTAACCAGGGCTCTCGCGCCAACAGTGTCATCAAGGGCACCAAGAAAGAACAGGTGGAGCAGATCATCAAGGATATCAGgtatatggatatggatgctaacgtgccttggtgctaaggtgcacccagtgcaacctaaaacaaataaatactactatgaatttggtaaatatacatacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaaa