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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTCGCGCTGAGGTGCGTGGATCCCGACTCGCAGAAACGGCCCAAGATGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctgtcgctagtagtggcttttttacctgtctagtgtctactctactatgcccaagtcaatcgtgctgctcattcgctcgcaatggacgctgca...

Basic information

species Zea mays
transcript GRMZM2G147051_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147051_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g36050.1 (Oryza sativa), 5'ss of exon 6
CCTGGTCGCGCTGAGGTGCGTGGATCCCGACTCGCAGAAACGGCCCAAGATGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctgtcgctagtagtggcttttttacctgtctagtgtctactctactatgcccaagtcaatcgtgctgctcattcgctcgcaatggacgctgca----
| |||| || |||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||||| |||||||| || ||||| ||||||| | | | |  | |   || | | |  |   |  | | | |||   |   |   ||   ||| | ||     | |  | | ||   |  |        
CTTGGTTGCTCTGAGGTGTGTGGATCCCGACTCGCAGAAGCGGCCAAAGATGGGGCATGTCATCCATATGCTCGAAGTCGATGACTTCCCATACCGAGAAgtgagccttcttgttctttgcatctctctgaagtcaatcatatttgctcatttgctcttcag---atcatactatatgtgca-tggtaactaatcccaagttac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878715|gb|EB408672.1|EB408672
EST:     TGGGGCAGGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GATCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|88755336|gb|DY539477.1|DY539477
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GGCCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|32795426|gb|CD947662.1|CD947662
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GATCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|71762919|gb|DR960856.1|DR960856
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|31909293|gb|CD650846.1|CD650846
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|211261971|gb|FK957243.1|FK957243
EST:     CTCGAAGTCGACGACTTCCCGTATCCTTAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: CTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|32808949|gb|CD961183.1|CD961183
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GATCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCTCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|71308371|gb|DR790412.1|DR790412
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|71439998|gb|DR821048.1|DR821048
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|31909329|gb|CD650864.1|CD650864
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|30088116|gb|CB886321.1|CB886321
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|31909517|gb|CD650958.1|CD650958
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|50337020|gb|CO532146.1|CO532146
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|28987043|gb|CB351436.1|CB351436
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|71315686|gb|DR794464.1|DR794464
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|32799292|gb|CD951528.1|CD951528
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GATCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|28910805|gb|CB331622.1|CB331622
EST:     TGGGGCCCGTAATCCCCATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAAC
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAAC
EST: gi|4646607|gb|AI491416.2|AI491416
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|32799005|gb|CD951241.1|CD951241
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GATCGTCGAACTCTTCGGCCGGGCGACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|211492061|gb|FL444499.1|FL444499
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GATCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|211261970|gb|FK957242.1|FK957242
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|32789815|gb|CD942051.1|CD942051
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGCCTTCCCGTATCGAGAG                         GATCGTCGAACTCTTCGGCCGGGCACCGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
EST: gi|29544270|gb|CB604650.1|CB604650
EST:     TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAG                         GACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG
genomic: TGGGGCACGTAATCCACATGCTCGAAGTCGACGACTTCCCGTATCGAGAGgtgagccctg ... gcttctgcagGACCGTCGAACTCTTCGGCCGGGCAACGGCAGCCCCCTGGAGAAGGCGAGG