1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGAGAAAATGCTTATTAGCATGGTGGAAACTGAACTGGAGAAGAGAAAAGCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttttttttttaattttgtgaactgagcaataacttggttggtagacttcccactgaggaggccacccctgagaattagtttcagggagttccctggccagctagggttttgggtactccacttttttaatacaaagccatgaaatgtcatctccaactctctcatgtagcttttgttattgcag
species | Zea mays |
transcript | GRMZM2G143862_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211507305|gb|FK969872.1|FK969872
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|148933739|gb|EC877663.2|EC877663
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GACAAGCTCATTTCTTTGG GTACGAAGGAAAGATGCGGCCCTTCCTACTAATTTTGATTCTAACTATTGCEST: gi|213170617|gb|FM193174.1|FM193174
genomic: GACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGG-AAGATGCGG-CCTTCCTACTAATTTTGATTCTAACTATTGC
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|67021131|gb|CO449880.1|CO449880
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: TGAGGGTGAGA-ACTCTGCACATTTCAGGA-GACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|32859024|gb|CD998705.1|CD998705
genomic: TGAGGG-GAGATACTCTGCACATTTCA-GAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|148934427|gb|EC878461.2|EC878461
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|149105031|gb|EE290510.2|EE290510
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: ATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211286471|gb|FL080392.1|FL080392
genomic: ATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: TTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|31359777|gb|CD444134.1|CD444134
genomic: TTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|67023546|gb|CO452295.1|CO452295
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: CTGAGGGGAGATATC-CTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|37398696|gb|CF636665.1|CF636665
genomic: CTGAGGGGAGATA-CTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|4886023|gb|AI677143.1|AI677143
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: CTCTGC-CATTTCAGAGG-CAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|22521074|gb|BU079885.1|BU079885
genomic: CTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|24767218|gb|CA402362.1|CA402362
genomic: GACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|67015451|gb|CO444200.1|CO444200
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|67024935|gb|CO453684.1|CO453684
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211286472|gb|FL080393.1|FL080393
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: ATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211182047|gb|FL030523.1|FL030523
genomic: ATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGSSTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|60343399|gb|DN210372.1|DN210372
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|60394144|gb|DN227014.1|DN227014
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|67012343|gb|CO441092.1|CO441092
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211507300|gb|FK969867.1|FK969867
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|67021107|gb|CO449856.1|CO449856
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|5108301|gb|AI740014.1|AI740014
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGC-CATTTCAGAGGCCAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|149081933|gb|EE171094.2|EE171094
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|87155550|gb|DY400339.1|DY400339
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|3157350|gb|AA979972.1|AA979972
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|26558921|gb|CA831156.1|CA831156
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211286477|gb|FL080398.1|FL080398
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCASAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTAEST: gi|211507306|gb|FK969873.1|FK969873
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
EST: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGG GTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
genomic: GCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttt ... gttattgcagGTACGAAGGAAGATGCGGCCTTCCTACTAATTTTGATTCTAACTATTGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGAAAATGCTTATTAGCATGGTGGAAACTGAACTGGAGAAGAGAAAAGCTGAGGGGAGATACTCTGCACATTTCAGAGGACAAGCTCATTTCTTTGGgtaagcgttttttttttaattttgtgaactgagcaataacttggttggtagacttcccactgaggaggccacccctgagaattagtttcagggagttccctggccagctagggttttgggtactccacttttttaatacaaagccatgaaatgtcatctccaactctctcatgtagcttttgttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA