1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcacagttttctgatagcctttggtcctactccatttcaaatgtttgccatctcacagtgtttttaacctaaaatgttttctgccattttag
species | Zea mays |
transcript | GRMZM2G138053_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT TGGCTGAGGTGATCTTTGCAATTACATCAGCAGTCAAGGATGTTTGTGCGAEST: gi|32937551|gb|CF042370.1|CF042370
genomic: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... gccattttagTGGCTGAGGTGATCTTTGCAATTACATCAGCAGTCAAGGATGTTTGTGCAA
EST: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTT TGGCTGAGGTGATCTTTGCAATTACATCAGCAGTCAAGGATGTTTGTGCGAEST: gi|15177341|gb|BI398280.1|BI398280
genomic: GGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... gccattttagTGGCTGAGGTGATCTTTGCAATTACATCAGCAGTCAAGGATGTTTGTGCAA
EST: TGTTGGCAAGGATGAATATGATGAGCTTGCTT GEST: gi|15177341|gb|BI398280.1|BI398280
genomic: TGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... gccattttag-
EST: TGTTGGCAAGGATGAATATGATGAGCTTGCTT G
genomic: TGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcaca ... gccattttag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGTGTCTATTGTTTATACCACGGTCGGGGATGTCTGCCTCTACATTGTTGGCAAGGATGAATATGATGAGCTTGCTTgtgagtcacagttttctgatagcctttggtcctactccatttcaaatgtttgccatctcacagtgtttttaacctaaaatgttttctgccattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT