1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCGCTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGGCGCATGTCTCCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattaccaaaagataataaaaaaggacggtttttctctctctctctaaaatttgttgacatgttcaataacttgtcctaaacag
species | Zea mays |
transcript | GRMZM2G130149_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|113702347|gb|EE679851.1|EE679851
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|78543921|gb|DV621419.1|DV621419
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: TAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|78104874|gb|DV523292.1|DV523292
genomic: TAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|76911847|gb|DV164463.1|DV164463
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|67012428|gb|CO441177.1|CO441177
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|23357664|gb|BU645313.1|BU645313
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|20811250|gb|BQ295728.1|BQ295728
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|71308212|gb|DR790338.1|DR790338
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|32851249|gb|CD990930.1|CD990930
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|22473234|gb|BU037714.1|BU037714
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|71315567|gb|DR794388.1|DR794388
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAAEST: gi|26457517|gb|CA829100.1|CA829100
genomic: CACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
EST: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAG GTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
genomic: CCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattac ... tcctaaacagGTGGTCCAGGATAGCACGCCGCTTGCCAGGGCGCACTGACAATGAGATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGCTGGGTCAACTACCTCCACCCTGGCCTCAAGCGTGGGCGCATGTCTCCCCATGAAGAGCGACTCATCCTAGAGCTGCACGCTCGGTGGGGAAACAGgtctgattaccaaaagataataaaaaaggacggtttttctctctctctctaaaatttgttgacatgttcaataacttgtcctaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC