1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TATGAAGCAATAGCAAGACTGGAAAAGGCTGCAGAACAAGGAAGTGCAATAGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcattgcatatctcaaaattctcaattcaaaaaccattttgatcatatgagtaaattgatataaactataaggtatattttataaaataatagt...
species | Zea mays |
transcript | GRMZM2G126656_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAG CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTCEST: gi|71304764|gb|DR788496.1|DR788496
genomic: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcat ... ctggttacagCTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTC
EST: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAG CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTCEST: gi|211362912|gb|FL253415.1|FL253415
genomic: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcat ... ctggttacagCTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTC
EST: CAGCTGCTGTTGAAGGGGTCGAAACGTCA-TTAGGAGGGAAACTTT-CAG CTCCTTCTGCTCTCATTGAAACTEST: gi|78086694|gb|DV515087.1|DV515087
genomic: CAGCTGCTGTTGAAGGGGTCGAA-CGTCAATTAGGAGGGAA-CTTTTCAGgtttctgcat ... ctggttacagCTCCTTCTGCTCTCATTGAAACT
EST: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAG CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATNGT-CAAACCTTCTEST: gi|30704520|gb|CD058548.1|CD058548
genomic: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcat ... ctggttacagCTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGAT-GTTCAAACCTTCT
EST: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAG CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTCEST: gi|71766059|gb|DR963996.1|DR963996
genomic: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcat ... ctggttacagCTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTC
EST: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAG CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTCEST: gi|148949419|gb|EC894878.2|EC894878
genomic: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcat ... ctggttacagCTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTC
EST: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAG CTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTC
genomic: AGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcat ... ctggttacagCTCCTTCTGCTCTCATTGAAACTCTAAGGGAGAGGATGTTCAAACCTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGAAGCAATAGCAAGACTGGAAAAGGCTGCAGAACAAGGAAGTGCAATAGCAGCTGCTGTTGAAGGGGTCGAACGTCAATTAGGAGGGAACTTTTCAGgtttctgcattgcatatctcaaaattctcaattcaaaaaccattttgatcatatgagtaaattgatataaactataaggtatattttataaaataatagt
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaacca