Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCTCAATGGCAATCATTTGACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacacgtcagcctcaaatgtttagaattctattctttccacactaatactcaattttacaatctacccaccttattatttcag

Basic information

species Zea mays
transcript GRMZM2G121820_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g59440.2 (Oryza sativa), 5'ss of exon 4
GCGTCTCAATGGCAATCATTTGACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacacgtcagcctcaaatgtttagaattctattctttccacactaatactcaattttacaa-tctacccaccttattatttcag
||| |||||||||||||  ||||||||||| |||||||||||||| || |||||||||||||| |||||||||| ||||||  ||     |   || | ||   |    |     || || |||  | ||| | | || | |  || |||| || ||||||
GCGGCTCAATGGCAATCGCTTGACTGGGCCAATCCCAAGGGAACTGGCCGGAATATCTAGTCTTAAAGTTGTgtaagtacaattc-----ctggtgctgagtgcttggctg----caaac-aatcttgaatgtgataaattttacccccttgttctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733713|gb|BE512465.1|BE512465
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|17929723|gb|BM266689.1|BM266689
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|71763196|gb|DR961133.1|DR961133
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|91874179|gb|EB404136.1|EB404136
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|26557278|gb|CA829513.1|CA829513
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|71766703|gb|DR964640.1|DR964640
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|60358579|gb|DN225552.1|DN225552
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|213184412|gb|FM188458.1|FM188458
EST:     CTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: CTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|15188221|gb|BI417198.1|BI417198
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGTGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|30087058|gb|CB885266.1|CB885266
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|5597188|gb|AI891181.1|AI891181
EST:     TGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: TGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|30032043|gb|CB833894.1|CB833894
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|149095176|gb|EE180793.2|EE180793
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|5895619|gb|AW036865.1|AW036865
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGN                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|60394754|gb|DN227624.1|DN227624
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|148972291|gb|EE023193.2|EE023193
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|31612157|gb|CD568779.1|CD568779
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|211244696|gb|FL479034.1|FL479034
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|76014413|gb|DT941583.1|DT941583
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|16137383|gb|BI894248.1|BI894248
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGTGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|4966551|gb|AI691407.1|AI691407
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|30086962|gb|CB885170.1|CB885170
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|22545940|gb|BU098299.1|BU098299
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|91873861|gb|EB403818.1|EB403818
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|30306876|gb|CD001549.1|CD001549
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|18170321|gb|BM340161.1|BM340161
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|60338279|gb|DN205252.1|DN205252
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|109637591|gb|EC591136.1|EC591136
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|15177611|gb|BI398550.1|BI398550
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGTGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|71436702|gb|DR817752.1|DR817752
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|78089347|gb|DV517721.1|DV517721
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACTTCTGGCCCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|211233135|gb|FL455795.1|FL455795
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|21809924|gb|BQ668242.1|BQ668242
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|211082646|gb|FL412210.1|FL412210
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGGAC-AT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGG-ACCAT
EST: gi|148941830|gb|EC886803.2|EC886803
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTTCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|76012011|gb|DT939181.1|DT939181
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|4885819|gb|AI676939.1|AI676939
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|9733712|gb|BE512464.1|BE512464
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|32940802|gb|CF045621.1|CF045621
EST:     CTGGGCCCATCCCAAGGGAACCTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: CTGGGCCCATCCCAAGGGAAC-TCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|22545450|gb|BU097809.1|BU097809
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCCTT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|60349397|gb|DN216370.1|DN216370
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|148933347|gb|EC877009.2|EC877009
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|15177610|gb|BI398549.1|BI398549
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGTGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|211478992|gb|FL272010.1|FL272010
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|28909789|gb|CB331101.1|CB331101
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|89131927|gb|DY577100.1|DY577100
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|148933348|gb|EC877010.2|EC877010
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|149000066|gb|EE037172.2|EE037172
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACTTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|60396509|gb|DN229378.1|DN229378
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|149095177|gb|EE180794.2|EE180794
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|101383854|gb|EB813982.1|EB813982
EST:     CTGGGCCCATCCCAGGGGAACTCGCTGGAATATCTAGTCTCAAAAGT-GT                         TGATGTTTCAAGTAAGGATTTGTGCGGGACGATTCCCCCGTCTGGACCAT
genomic: CTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAA-GTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCAT
EST: gi|15323606|gb|BI478890.1|BI478890
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGTGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|30306664|gb|CD001337.1|CD001337
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|22549219|gb|BU101420.1|BU101420
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|15323607|gb|BI478891.1|BI478891
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGTGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|30088202|gb|CB886407.1|CB886407
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|78027497|gb|DV495884.1|DV495884
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|149000067|gb|EE037173.2|EE037173
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|211152911|gb|FL469818.1|FL469818
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|37373616|gb|CF623115.1|CF623115
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|18659525|gb|BM500384.1|BM500384
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGTGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|149000533|gb|EE037716.2|EE037716
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|78077979|gb|DV506396.1|DV506396
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|211392189|gb|FL369325.1|FL369325
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|37396731|gb|CF635659.1|CF635659
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|71766702|gb|DR964639.1|DR964639
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|78077978|gb|DV506395.1|DV506395
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|22521623|gb|BU080434.1|BU080434
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|60348625|gb|DN215598.1|DN215598
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|22546266|gb|BU098577.1|BU098577
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|78089348|gb|DV517722.1|DV517722
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|31997810|gb|CD661783.1|CD661783
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|31997809|gb|CD661782.1|CD661782
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|71448904|gb|DR829954.1|DR829954
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|30031710|gb|CB833561.1|CB833561
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|71319607|gb|DR796562.1|DR796562
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|110202223|gb|EC884120.1|EC884120
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCGCGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|71758054|gb|DR955991.1|DR955991
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|60398400|gb|DN231216.1|DN231216
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|14243408|gb|BG841108.2|BG841108
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|29576741|gb|CB616853.1|CB616853
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGG
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGG
EST: gi|148994954|gb|EE034307.2|EE034307
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|40334004|gb|CK368074.1|CK368074
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGNATGTTTCA-GTAATGATTTGTGCGGGAC-ATTCCCACGTCTGGACCAT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTG-ATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCAT
EST: gi|37388668|gb|CF631545.1|CF631545
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|91874178|gb|EB404135.1|EB404135
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGGCCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT
EST: gi|37381290|gb|CF627520.1|CF627520
EST:     ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGT                         TGATGTTTCAAGTAATGATTTGTGCGGGACAATTCCCACGTCTGGACCATT
genomic: ACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 361

GCGTCTCAATGGCAATCATTTGACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 392

GCGTCTCAATGGCAATCATTTGACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 459

GCGTCTCAATGGCAATCATTTGACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 536

GCGTCTCAATGGCAATCATTTGACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacac ... attatttcagTGATGTTTCAAGTAATGATTTGTGCGGGACGATTCCCACGTCTGGACCATTTGAGCATATTCCTCTGAGCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGTCTCAATGGCAATCATTTGACTGGGCCCATCCCAAGGGAACTCGCTGGAATATCTAGTCTCAAAGTTGTgtgagtacacgtcagcctcaaatgtttagaattctattctttccacactaatactcaattttacaatctacccaccttattatttcag

- - - - - - - - - - - - - - - - - - - - - - - GCTGGA