1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACTACAACATCAACAAGAGCTGGCAGAACTAAGATGACTGTTCCCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtatatagttttcttgcattatttctagatggttgcttaattcattctgattattcacaactagcaagcagccaagcacttttgttccaaaaaaggttaggtagtgacagtgttgttattacccag
species | Zea mays |
transcript | GRMZM2G121176_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGTCGTTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|76912444|gb|DV164735.1|DV164735
genomic: CCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtatatag ... tattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|22715097|gb|BU197576.1|BU197576
genomic: CCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtatatag ... tattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|17930498|gb|BM267458.1|BM267458
genomic: CCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtatatag ... tattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: GCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|71441125|gb|DR822175.1|DR822175
genomic: GCTGACAAGAGGAAGGAGgtgtatatag ... tattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: GTCGCTCCTTCATTGGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGACEST: gi|76912446|gb|DV164736.1|DV164736
genomic: GTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtatatag ... tattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
EST: CGTCGCTCCTTCATTTGTGTGTGCNTA-CCGTGCTGACAAGAGGAAGGAG TTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
genomic: CGTCGCTCCTTCATTTGTGTGTGC-TAACCGTGCTGACAAGAGGAAGGAGgtgtatatag ... tattacccagTTCTACACAAAATTAGAGGAGAAACATAAAGCTTTGGAAGCAGAGAAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTACAACATCAACAAGAGCTGGCAGAACTAAGATGACTGTTCCCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAGgtgtatatagttttcttgcattatttctagatggttgcttaattcattctgattattcacaactagcaagcagccaagcacttttgttccaaaaaaggttaggtagtgacagtgttgttattacccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG