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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag

Basic information

species Zea mays
transcript GRMZM2G110714_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 6
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
|||||||| ||||| |||||||||||||||||||| |||||  |||| |||||||| ||| | ||||| |||||||||||||||||||| |||||||||||||  |  |||      |  | | ||||   |  ||| || ||      |||  || || | | |||   || |  || |||  | || |                        
AGGGTTGATACTGCCCTTAAGAACATTGGCATAAACGAGCGAGTGCCCTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGTGGAGACCGTGATGgtatgttacatctatcatatcatgtttg--caacatagttaatt-----aattgtgaaattatggttt-taatattgatgtg-gactacag-----------------------

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 5
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgat-gtgctgaatcatgcaactg---tagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 | || ||||| ||| | || || || || || || |||||  | || |||||||| ||  | ||||| ||||||||||||||||||||||| || |||||||  |||  || | | |   ||      ||||| ||| | || ||  |  |     ||| ||   |  |   |||     | || | ||||| |  | |                  
CGTGTAGACACAGCTTTGAACAATATAGGGATTAAAGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGTGGTGATCGGGATGgtat-tagtcttatttgtgattttaaaaaatagtgtatattatcgtagtatactggacaaatggaatgatatgcaaattttatgttccaatatgatacag------------------

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G36670.1 (Glycine max), 5'ss of exon 5
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcat-gcaactgtagttcacaagaaagaagtgcaaatataactctgaactga-tgtccatgacag--------------------------------------------------------------------------------------
 |||| || || ||||| ||||||||||| || ||||| ||  | ||||||||||| ||| | |||||||| |||||||||||||| || || ||||||||||  |  | || |  ||     |||     |  |   ||  |   || | || | |  ||  |   | ||            |||||||   | |  ||| | | ||  |  |||                                                                                      
CGGGTAGATACAGCTCTGAAGAACATTGGAATTAATGAACGTGTCCCATATAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGTGATGgtatctttc-ttttggctaagaaattaaagaaacaagcttttttatctaactctttgtgacaattccttactttttgcc--cccaaatattcatatagactaaatatctttttcagcttcagttttggacaccgcctcagagatgtggcttgtaatatacttattagtttctatcttacaaaatgtctaatttgcattgtag

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G33820.1 (Glycine max), 5'ss of exon 4
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctccc--ttatttggata-gtatatttgatgtgctgaatcatgcaa-------ctgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag----------------------------------------------------------------------
 |||| || || ||||| ||||||||||| || ||||| ||  | ||||||||||| ||| | |||||||| |||||||||||||| || |||||||||||||  |  | ||  |        ||| |   | | | || |||  |   ||   |  | |||       || |   || | | |      |    ||||   | | ||||   ||    ||||                                                                       
CGGGTAGATACAGCTCTGAAGAACATTGGAATTAATGAACGTGTCCCATATAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatctttcttttccctaagaaattaatgaaacaagcatttttattaacctctttgttacaattccttactttttgtccccaaatgttcatatgtatatctttttcaacttcagtttgggacactgcctcagagatgtggcttgtaatatacttattggtttctatcttacaaaatgtctaatttgcattgtag

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G33380.1 (Glycine max), 5'ss of exon 4
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 | ||||| || ||| | ||||| || || || ||||||||  | || |||||||| ||| ||||||| ||||| |||||||||||||| || ||||||||||  |     | ||||    | |  || |    |   || |   |     | ||| |  |   |||||    | | ||||| |||  | | | ||||                
CGTGTTGATACAGCTTTGAAGAATATAGGGATCAATGAGCGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCCTCTTGGATGGGTGGAGATCGTGATGgtatgttcttatttctcagtataaaatgaaggagaatgttaacaagtgctcttatg-atatactgttcaaggaataaaagtgaaaagtttattatgaaaaa-------------

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G09810.1 (Glycine max), 5'ss of exon 5
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggat-agtatatttg-atgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 | ||||| || ||| | ||||| || || || || || ||  | || |||||||| ||| ||||||| |||||||||||||||||||| || ||||||||||  |     | ||||    | |  || |  || || |||  | |||||    | | | |   ||||| |    | | ||||| |||  | | | ||||    |           
CGTGTTGATACAGCTTTGAAGAATATAGGGATCAACGAACGTGTCCCTTATAATGCTCCTCTCATTCAATTTTCTTCTTGGATGGGTGGAGATCGTGATGgtaggttcttatttctcagtataaaatgaaggagaatgtttacaagtgct----cttacgatactagttaa-ggaataaaagtgaaaagtttattatgaaaaagt-----------

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G43050.1 (Glycine max), 5'ss of exon 4
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttga-tgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 |||||||||||||||| |||||||||||||||||||| ||  | ||||||||||||||| | ||||| || |||||||||||||| || || ||||||||||     | |||| |    | ||    | || |   |   |  || |      | |||  | || ||  |||    ||  |     | |    |  || | |||    ||    
CGGGTTGACACTGCTCTGAAGAACATTGGCATAAATGAACGTGTTCCATATAATGCCCCTGTTATTCAATTCTCTTCTTGGATGGGAGGAGATCGTGATGgtat----cgttctttt---cctaagcagttaatgagtggaaacgttcctctctaagcagttttatttgtcaaatgtgattt-----ttttttgccaaagt-atgcatgtggt--

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G53310.3 (Arabidopsis thaliana), 5'ss of exon 4
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 | |||||||| ||| | || ||||| || ||  | || ||  | ||||||||||| ||  | |||||||| |||||||||||||||||||| ||||| |||||||    ||||      | |  | | ||||     ||  || |||   ||    ||  ||  | | || |  | ||   || | |||  | || | |              
CGTGTTGACACGGCTTTGAAAAACATAGGGATCGAAGAACGTGTTCCATATAATGCTCCATTGATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGACGgtacat----ttctacaagtccttctcgcatagctctcttattgcgctccctctcttaatggttttactcatgtcacaaactcaca-atatatgtgtatttgcag---------

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G42600.1 (Arabidopsis thaliana), 5'ss of exon 5
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 | |||||||| ||| | ||||||||||| || || |||||  | || || ||||| ||| |||||||||| |||||||||||||| || |||||||||||||||     ||   |||  ||||| |              |     | || |||| || ||  ||||  | ||     ||| ||| ||   ||||||   |            
CGTGTTGACACAGCTTTAAAGAACATTGGAATCAACGAGCGTGTTCCTTACAATGCGCCTCTCATTCAGTTCTCTTCTTGGATGGGCGGAGACCGTGATGgtacac--tcttgcttctttcttatct------------caaaccattaaaacatg-aattg--gttcttatga-----gtgaaaacatt-ttctgaatctag-----------

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv12s0028g02180.t01 (Vitis vinifera), 5'ss of exon 4
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcatgcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 | ||||| || ||| | |||||||| |||||| |||| ||  | || |||||||||||  | |||||||||||||||||||||||||| || |||||||||| | | | || ||   |      |||   || ||| |     | ||| ||  | |     ||| |     || | |  | |||   |  || |  | || |     |     
CGTGTTGATACAGCTTTGAAGAACATAGGCATAGATGAACGTGTTCCTTATAATGCCCCCCTTATTCAGTTTTCTTCTTGGATGGGTGGGGATCGTGATGgtata-atccttttcagacaacccattgatgagcatactc--cctcctgcat--ttctttcatagct-----gagaaagattcaatgttgtctatacattgtttcatttt----

upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 4
AGGGTTGACACTGCTCTTAAGAACATTGGCATAAATGAGCGGTTGCCATATAATGCCCCTATCATTCAGTTTTCTTCTTGGATGGGTGGTGACCGTGATGgtacatagcattctctctcccttatttggatagtatatttgatgtgctgaatcat--gcaactgtagttcacaagaaagaagtgcaaatataactctgaactgatgtccatgacag
 | |||||||| ||| | || ||||| ||||||||||| ||  | || || ||||| ||| | |||||||| |||||||||||||||||||| ||||||||||   ||  |||| || |    |  |  ||| |  | ||  | |  ||||| ||  |||    | ||| |      |   | | |||| || |     | ||             
CGTGTTGACACAGCTTTGAAAAACATAGGCATAAATGAACGTGTTCCTTACAATGCACCTCTAATTCAGTTCTCTTCTTGGATGGGTGGTGATCGTGATGgtatg-agtcttct-tcacaaacaaatatatattcaacttattttcttgaattataagcattgcttgttaatttaggaatggaggaaat-tagcaaaacattg-------------