Sequence
atgc intronic sequence ATGC exonic sequenceACTTGTTGATCTTACTAGTCGAGCTCTTGCTCGAATTATTGAAGGAAAGACACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgttagagtgccttctatagctttagatgtgaaatcattaaatacttactgtcaaaacttacatgccctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G109725_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 4
ACTTGTTGATCTTACTAGTCGAGCTCTTGCTCGAATTATTGAAGGAAAGACACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgttagagtgccttctatagctttagatgtgaa-atcattaaatacttactgtcaaaacttacatgccctcag
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ATTGGTTGATCTTACCAGTCGAGCACTTGCTCGAATAATTGAAGGAAAGACACCTGAGGAAATTCGTGATATTTTCCATTTGCCAGATGACTTAACAGAGgtacaaatcgcatgtctgcttatagttatcagcatgtattgatgcttactgt-ggaacttgcattcattcag
upper sequence: GRMZM2G109725_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA03G01090.2 (Glycine max), 5'ss of exon 3
ACTTGTTGATCTTACTAGTCGAGCTCTTGCTCGAATTATTGAAGGAAAGACACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgt-tagagtgccttctatagctttagatgtgaa----atcatt---aaatacttactgtcaaaacttacatgccctcag-------
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TTTGGTGGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACACCGGAGGAGATACGTGATATATTTCATTTGCCTGATGATCTTACAGAGgtgtctggtgcttgtgagaactctgtatgccaattatatctttttggattttctattttcatttctcacgcattcttttgatccag
upper sequence: GRMZM2G109725_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G25090.1 (Glycine max), 5'ss of exon 3
ACTTGTTGATCTTACTAGTCGAGCTCTTGCTCGAATTATTGAAGGAAAGACACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgt-tagagtgccttctatag-----ctttagatgtgaaatcattaaatacttactgtcaaaacttacatgccc-tcag
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TTTGGTTGACCTGACCAGCCGAGCACTTGCTCGGATTATTGAAGGAAAAACTCCTGAGGAGATTCGTGAAACATTTCATTTGCCTGATGATCTCACTGAGgtgtgtgatgatagcgaaagtgagcctttaagtctgcaatcat--atttctt--tatttacattaggatctttgccag
upper sequence: GRMZM2G109725_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G07600.1 (Glycine max), 5'ss of exon 4
ACTTGTTGATCTTACTAGTCGAGCTCTTGCTCGAATTATTGAAGGAAAGACACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgt-tagagtgccttctatagctttagatgtgaa----atcatt---aaatacttactgtcaaaacttacatgccctcag-------
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TTTGGTTGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGGAAAACACCAGAGGAGATACGTGATATATTTCATTTGCCTGATGATCTTACAGAGgtgtctggtgcttgtgagaactctgtatgccaattatatctttttggattttctattttcatttctcacgcattcttttgatccag
upper sequence: GRMZM2G109725_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G61415.2 (Arabidopsis thaliana), 5'ss of exon 4
ACTTGTTGATCTTACTAGTCGAGCTCTTGCTCGAATTATTGAAGGAAAGACACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgt-tagagtgcctt--ctatagctttagatgtgaaatcattaaatacttactgtcaaaactta-catgccctcag----------
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GTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGAAAAACCCCTGAGGAGATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGgtatgttgtgcccaaatcatctctttttaggaggcgtcattcc-catctgcttctatattttagctttttgttacgatttatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211218504|gb|FL448109.1|FL448109EST: CACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAG GAAGAGAAGTTGGAGCCCCTAAAAAATGTAAATGATGATCCTAGGATTCGC
genomic: CACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgttagagtgc ... atgccctcagGAAGAGAAGTTGGAGCCCCTAAAAAATGTAAATGATGATCCTAGGATTCGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTGTTGATCTTACTAGTCGAGCTCTTGCTCGAATTATTGAAGGAAAGACACCTGAGGAAATCCGTGACATTTTCCACTTACCAGATGACTTAACAGAGgttagagtgccttctatagctttagatgtgaaatcattaaatacttactgtcaaaacttacatgccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG