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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCATGATCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaactaccatcctttttccatgcttctgctgctgatttcctttgttcgtcaatatatgataataacctgtgagtgttttttttacttctgttgcggtgcatattcag

Basic information

species Zea mays
transcript GRMZM2G097768_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097768_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g50280.1 (Oryza sativa), 5'ss of exon 3
TCTCTCATGATCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaactaccatcctttttccatgcttctgctgctgatttcctttgttcgtcaatatatgataataacctgtgagtgttttttttacttctgttgcggtgcatattcag
|||||||||||||| || ||||| ||||| |||||||||||||| ||||| |||||||| ||||| |         | | |  || |     ||| | |   ||   ||  | || | |   |||  |||| | || |            |||||||     | |  ||| |||
TCTCTCATGATCGCGGCAATTCCTAACATTATTGGGTGGCTCGCAATATCTTTTGCAAAGgtaaggtt--------ttcatgctcgag----ctgttaccagttagtttgatccgccca---atgccaatagcttgcgca----------acttctgaaattg-gtttatccag

upper sequence: GRMZM2G097768_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA14G08070.1 (Glycine max), 5'ss of exon 4
TCTCTCATGATCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaactaccatcctttttccatgcttctgctgctgatttcctttgttcgtcaatatatgataataacctgtgagtgtt-----ttttttacttctgttgcggtgca--tattcag----------------------------------------------------------
||| | ||||| ||  | |||||||| || ||||| ||||| || || |||||||||||||||||||  | |    |   | ||  ||  |||  |   | |||| |         || ||  || || |    ||||  | |      ||| ||  || |       ||||  |||| ||                                                          
TCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGCTGGCTATCTCATTTGCAAAAgtaagtttgaatgattttagtattttat-tttcctccattcatttacccaaaattacattaattggtatttcaatgtggttctggataatttattgtttatccaaacatgcaattatttagtaaatatatttggtcgtgattctgagcttgtcttattgacatgttcttcaattttcag

upper sequence: GRMZM2G097768_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT1G19450.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTCTCATGATCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaactaccatcctttttccatgcttctgctgctgatttcctttgttcgtcaatatatgataataacctgtgagtgttttttttacttctgttgcggtgcatattcag
||||| ||||| ||||| ||||| || || ||||| |||||  ||||||||||||||||||| |||          |  | ||  ||       | | ||||| | ||| | |  ||  ||||   || |||  |||   |||| ||  |  || | | |              
TCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGCAAAAgtgagt------gttttggtgttctcaaa-----gtttctgatattcttggcttatctctatacc-tactaagttgttgttgttcttggtttttgtttag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50325333|gb|CO520459.1|CO520459
EST:     TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCT
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCT
EST: gi|148987704|gb|EE031592.2|EE031592
EST:     TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTGGGT
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
EST: gi|71766862|gb|DR964799.1|DR964799
EST:     TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAAGATTTGGAGTTGGT
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
EST: gi|50325566|gb|CO520692.1|CO520692
EST:     TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCT
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCT
EST: gi|148964510|gb|EC905855.2|EC905855
EST:     TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
EST: gi|71331313|gb|DR802490.1|DR802490
EST:     TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAAGATTTGGAGTTGGT
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
EST: gi|21390663|gb|BQ528712.1|BQ528712
EST:     TATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
genomic: TATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
EST: gi|148991896|gb|EE033498.2|EE033498
EST:     TCGCTGCGATTCCAAAAATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCCTCTTTCTTGTTTATGG
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCC-TCTTTCTTGTTTATGG
EST: gi|148958173|gb|EC904377.2|EC904377
EST:     TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAA                         GATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT
genomic: TCGCTGCGATTCCAAACATAATTGGGTGGCTCGCGATATCATTTGCAAAAgtaagttcaa ... gcatattcagGATTCCTCTTTCTTGTTTATGGGTCGGCTGCTAGAAGGATTTGGAGTTGGT