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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATCGATGAAGCTTTAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaattaagcattttccacctgcaagtgcttttactagttatatgcagttagagttactatggatatctccacatctgggacattagtttctgtca...

Basic information

species Zea mays
transcript GRMZM2G094978_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094978_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g36750.1 (Oryza sativa), 5'ss of exon 4
GTTAATCGATGAAGCTTTAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaattaagcattttccacctgcaagtgcttttacta-gttatatgc-agttagagttactatggatatctccacatctgggacattagtttctgtca
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GTTAATAGATGAAGCCCTAGGAAAAGGAGTGAAAGTTGCAGTATGCAGTACTTCAAATGAGAAAGCTgtgagtaacacaatatttccaccttaaatgtacttttatgaagttaattgttaggattggtaataacaattgttttcattttttatgaaatctttcttct--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91056651|gb|EB167069.1|EB167069
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|149014075|gb|EE043602.2|EE043602
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|71448345|gb|DR829395.1|DR829395
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|149112364|gb|EE295251.2|EE295251
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|50333792|gb|CO528918.1|CO528918
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|71764323|gb|DR962260.1|DR962260
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|211136606|gb|FL156037.1|FL156037
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCGATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|149095606|gb|EE165515.2|EE165515
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|71300514|gb|DR786312.1|DR786312
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|71300530|gb|DR786320.1|DR786320
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|101382873|gb|EB813490.1|EB813490
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|50327117|gb|CO522243.1|CO522243
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|101388003|gb|EB816016.1|EB816016
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
EST: gi|71766392|gb|DR964329.1|DR964329
EST:     TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCT                         GTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT
genomic: TAGGAAAGGCAGTTAAAGTTGCAGTGTGCAGTACATCAAATGAGAAAGCTgtaagtaatt ... ctgattacagGTTTCAGCAATAGTGTCGTACTTATTGGGGCCTGATAGAGCTGATAAGATT